Volume slice visualization gui

GUI for manipulating slices and isosurfaces over a volume.Control over color transparency, contours, and rendering techniques via menus.Original sliceomatic 1.0 for older versions of MATLAB is in the

Interactive viewer of 3 orthogonal slices of 3D volume.

Simple interactive viewer of 3 orthogonal slices of 3D volume and of sequence of volumes. The interaction is performed by mouse left button or keyboard arrows.

GUI for exploration of 3D images (stacks)

Solid object reconstructed from slice images in parallel planes.

Often three dimensional objects need to be reconstructed from planar images that are taken from slices in destructive testing. This sometimes requires the manual selecting of control points, but in

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI

This function can be used to interactively view any kind of 2D,3D and 4D image volumes like CT and MRI. Allowing segmentation and distance measurements or ROI selection in 2D slices.It includes

imshow3D:(3D imshow) Displays 3D images slice by slice.Intensity adjusting & slice browsing by mouse

imshow3D displays 3D grayscale or RGB images in a slice by slice fashion with mouse-based slice browsing and window and level adjustment control, and auto slice browsing control.Usage:imshow3D (

imshow3Dfull displays 3D images slice by slice in 3 orthogonal views, with mouse control

imshow3Dfull is an extended version of imshow3D. It displays 3D grayscale or RGB images from three perpendicular views(i.e. axial, sagittal, and coronal) in slice by slice fashion with mouse based

A minimal "slicer" for the exploration of 3-D volumes using mouse interaction

The code includes a minimalistic software for interactive exploration of 3-D volumes. Its key feature is that the slices may be moved using the mouse pointer. Minimalistic means that it does not

GIBBON: The Geometry and Image-Based Bioengineering add-ON for MATLAB

Numerical computation with functions

slice stl files and create continuous contour along the slices

This contains the matlab files to slice a stl file and create a continuous contour along which the machine can move for deposition for 3D printing. The main file is slice_stl_create.mThe supporting

Laser Cut Slicer in MATLAB / Porsche 917K

Laser Cut Slicer in MATLAB / Porsche 917KThis MATLAB code helps you to realize a 3d object with stacked laser cut plates:Extract the intersection of a 3d STL object and a cut plane, visualize, and

This function will draw multiple MR images in 3D space using DICOM header information

The three-dimensional viewing of MRI images can help understand the position of (double) oblique slices as often used in cardiac MRI. The function returns a figure handle which can be used as input

ExtractSlice extracts an arbitrary slice, both intensities and indices, from a given volume.

ExtractSlice extracts an arbitrary slice, both intensities and indices, from the input volume given the center and normal of the slice. If you are familiar with IDL, this is the equivalent function

Transform 3D STL file (StereoLithography) into 2D series BMP files.

Slicing_project.m file w/ matlab. 2. Run it/F5. Enjoy it. ========================================GUI troubleshooting ========================[step 1] Open GUIDE under ("new/App/GUIDE").[step 2] Open 'Slicing

Slice a Delaunay mesh

sliceDelaunay.m returns the cross-section points of a plane for a delaunay triangulation meshing.

Inverse every 2D slice for an arbitrary N-D array (M).

Inverse every 2D matrix slice (the first two dimensions) for multi-dimensional array M: M(:,:,p,q,...) * X(:,:,p,q,...) = repmat(eye(m),[1,1,p,q,...]),where input M is a N-D array (m x m x [p x q x

Read a series of dicom slice images to a 3D volume image and meta data.

This function reads all good dicom files in a given directory and outputs a volume image. The slices are sorted by the SliceLocation tag in the image header. If no directory is specified, it opens

slicing image with background using 2 threshold values

slicing image with background using 2 threshold values

A GUI to help create transparent 3D isosurface maps of volumetric data.

IsoSlicer is a MATLAB GUI to help create a 3D equivelent of a contourplot for volumetric data. The product is a figure with a series of overlayed transparent iso-layers created using the MATLAB

For MATLAB 7 or later. Returns actual coordinates of polygons representing contour lines ....

than one, contour altitude(s)If v is a scalar:[xc,yc] = Column vectors containing the NaN-delimited polygon(s) defining the contour slice at altitude vIf v is a vector:[xc,yc] = Cell arrays of column

convertion of image to black and white image using slicing image without background.

convertion of image to black and white image using slicing image without background.we have to inter two thresholdvalues for doing that...

IMAGE BIT PLANE SLICING

IMAGE BIT PLANE SLICING

Here you find an excellent result abou the concept of "Gray Level Slicing"

Image Enhancement is one of the fundamental concept for the learners, here i gave my support with program for the better understanding of the concept called "Gray Level Slicing" one of the "Point

Enables reading 2 dim slices of 3 dim matrix stored in MAT file

This project demonstrates a simple example of extracting a 2-dim slice of a 3-dim matrix stored in a MAT file without needing to read in the entire MAT file. This may be useful when the full 3-dim

Medical software for Processing multi-Parametric images Pipelines

Equivalent ellipsoid from 3D image

SphericalHough detects spherical structures from 3D images - determines object center and radius

Experiments of reconstruction using Fourier Slice Theorem (rather than filtered back projection).

Direct Fourier Reconstruction of a Tomographic SliceExperiments of reconstruction using Fourier Slice Theorem (rather than filtered back projection, FBP).The implementation reconstructs a tomographic

The Alpert transform is a multiwavelets transform based on orthogonal polynomials.

Enable custom workflows for labeling volumes and isosurfaces in your MATLAB app.

LabelingIsosurface Visualization and Annotation LabelingSlice Plane (X/Y/Z) visualizationAdditionally included are sample apps for:Interactively labeling points, lines, polygons, and masks on an image stack

MVTec Halcon function mex-wrapper

MNI2FS: High Resolution Surface Rendering of MNI Space Volumes

Functions to add a simple alternating rectilinear infill pattern and additional shell contours to outline slice data.

The main function is add_features.add_shell, add_infill and process_slice_data are supporting functions.plot_slices is used to visualise the results.It is recommended to use other functions to

A toolbox for performing image registrations on 4D RTOG files or any other volumetric image.

function E = bitreslice(A,b_old, b_new, echo_on) Re-packages bits of a matrix of integers.

b_new to work.Inputs:A - An M by N matrix of unsigned integersb_old - Number of bits to represent A, should be based on maximum valueb_new - New number of bits to slice each

A 3D volumetric data slice viewer for viewing 3D data in different orientations.

This tool allow users to view 3D data in different orientations slice by slice. It is useful to view 3D medical image data (or general 3D volumetric data). It supports many user interactive

watermarking of 3d images in dicom format

Plots 2D data sets in a 3D co-ordinate system.

(This may have been done before ...) These two files plot 2D data sets as vertical or horizontal slices in a 3D coordinate system. It is similar to MATLAB's slice function but requires only 2D data

View 3D data slice by slice using imagesc

imagesc3D displays 3D images using imagesc fuction from 3 perpendicularviews (i.e. 3 (e1-e2 planes), 1 (e2-e3 planes), 2 (e3-e1 planes), )) in slice by slice fashion with mouse based slice browsing

Can generate 2D or 3D Gabor filter kernels. Parameters enable almost any kernel to be created.

functionality sz = size of gabor kernel created [optional, size set automatically to 3 standard deviations of gaussian kernel]>> help slice_slider slice_slider(3d_volume) plots a 3d

Finite-element-based global DVC method (guarantee global kinematic compatibility and decrease noise by adding regularization penalties).

Frames slices and plots a line where two slices intersect.

This function is built around MATLAB's slice function. It plots a black line along the edges of each slice and a dotted line where two slices intersect. This may be useful to help in the

A stl files slicer to generate gcode file for real printing

AM slicer can generate gcode from STL file, you can define printer parameters, and some print settings This is only a basic version, the slicer has passed the actual printing test, and has built in

This program is useful for debugging fMRI analyses and models.

Selects and plots a cdata slice

marker appears over the object, and a new figure is opened, containing a plot of the selected slice. Closing this figure removes the marker.Usage example:>> figure; imagesc(randn(100));>&gt

Volume explorer tool by 3 orthogonal slices

Orthogonalslicer creates 3 figures showing the 3 orthogonal slices from a scalar volume of data. Cross lines on each image represents lines of intersection of the appropriate plane and the two other

Image slicer to visualize multi-channel image data.

Implementation of an image cube slicer for multi-channel images (eg. hyperspectral-, MRI-, satelite- or any other kind of image data with more than 1 band).The image cube slicer contains of an image

A fast 3D image viewer and slicer that provides measurement, statistics, and visualization tools.

--------------------------------------------------------------------------------A 3D image viewer, slicer and measurement tool

Morphs intervening slices between two binary masks

morph_binary.m takes two 2D binary images and interpolates slices between them to produce a 3D binary image stack. This technique may be useful when attempting to create a volume-of-interest on a 3D

Automated tracking of fluorescently labeled cells

MPEG2 Video Encoder

This is a image slice viewer with built in scroll, contrast, zoom and ROI tools.

Use this class to make a self-contained image viewing panel within a GUI (or any figure). Similar to imtool but with the added ability to scroll through slices of an image stack. Only designed to

3D volume viz with interactive slice selection, colored ortho-planes, windowing, colormap selection.

orthogonal planar views (neurological coordinate system) along with the built-in 'slice' visualization. Further, as you select slices through click and drag or scroll, the 3D view and color-coded orthogonal

Slice STL files and analyse void distribution in the reactors

; the other for both the reactor and the filled particles.Use this script for analysis of the void distribution slicing the files into horizontal cross-sections. Each cross-sectional slice is divided into

Gaussian process models for Bayesian analysis

An interactive viewer for 3D and 4D data sets.

a cropped volume, 2D slices, and a range of time frames (4th dimension).Demo call function (volViewerDemo.m) and data are included along with a detailed user manual, which can be accessed as pdf file

slice into irregular grids with smartSlice and iGSlice. NaN values are allowed.

slice.m does not allow non-monotonic matrices or NaN values. However, a 3D volume may often meet these limitations. For example, a 3D grid may be constructed first by 2D interpolations of scattered Z

Displays 3 orthogonal slices from a 3D volume with optional overlay.

overlayVolume interactively shows three orthogonal slices from a 3D volume, with optional overlay. Display ranges, colormaps, transparency and the pixelsize can be changed.Volumes of interest can be

Exploration of the spatial characteristics of a circular piston with 4D slices.

polar response families (at different frequencies) for the acoustic far field. The codes provide:1) 4D plot of the spatial characteristics of a circular piston with slices across the three dimensions;2