neuropoly/axonseg

Version 3.0.0.0 (6 MB) by Aldo Zaimi
AxonSeg is a GUI that performs axon and myelin segmentation on histology images.
5.0
(2)
1.7K Downloads
Updated 12 Jun 2019
View License on GitHub

Segment axon and myelin from microscopy data. Written in Matlab. The compiled versions are also available for those who do not have the necessary processing toolboxes.

Cite As

Aldo Zaimi (2024). neuropoly/axonseg (https://github.com/neuropoly/axonseg), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2014a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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code

code/Blockprocessing

code/GUI

code/Registration

code/Seg_axon

code/Seg_axon/LevelSet_Segmentation_ChunMing_Li

code/Seg_axon/ShapeDiscrimination

code/Seg_axon/region_growing

code/Seg_myelin

code/Seg_myelin/MinimalPath

code/Seg_myelin/Snake

code/Seg_myelin/Snake/BasicSnake_version2f

code/Stats

code/Stats/tree classification

code/axonlist

code/get_stats_from_template_registration

code/imageprocessing

code/imageprocessing/StitchingFiji

code/pipeline

code/statsExtraction

code/testing

code/utils

code/utils/NIfTI

code/utils/NN_project/NN_project1/NN_project

code/utils/comparaisonReport

code/utils/createMontage

code/utils/ellipseDetection

code/utils/kmeans_fast_Color

code/utils/litekmeans/litekmeans

code/utils/mask2poly

code/utils/matlabCentral/activeContour-sfm_chanvese

code/utils/matlabCentral/export_fig

code/utils/matlabCentral/ndhist

code/utils/matlabCentral/nhist

code/utils/matlabCentral/qinterp2

code/utils/matlabCentral/sc

code/utils/matlabCentral/sc/private

code/utils/nonrigid_version23

code/utils/nonrigid_version23/functions

code/utils/nonrigid_version23/functions_affine

code/utils/nonrigid_version23/functions_nonrigid

code/utils/nonrigid_version23/low_level_examples

code/utils/normxcorr2_general

code/utils/selectdata

code/utils/sort_nat

code/various scripts

doc

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
3.0.0.0

- Linked with github repository.
2.2.0.0

Added reference.
---
2.1.0.0

Small updates.
2.0.0.0

This is a more recent version.
1.2.0.0

See https://github.com/neuropoly/axon_segmentation/releases/
Changed screenshot
1.1.0.0

Added tutorial link in the description field.
description
doc
To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.