How to read, display and process .mha files in MATLAB?

I am having BRATS database of brain MR images with tumor in .mha format. How to read, display and process .mha files in MATLAB?

[Mansi Lather]

Can you provide me the Brain MR images database.My email id is [e-mail]

[Tan Leng Yee]

Can you provide me the Brain tumor MR images dataset. My email is [e-mail]. Thank you.

[Rushabh Kanadia]

Hi, I am not able to access the BraTS Dataset as well, my email address is rushabhkanadia at gmail dot com

Could you please share it with me. Please

Answer 1

[Muhammad Imran]

function data = mhd_read_image(filename)
info = mha_read_header(filename);
data = mha_read_volume(info);

[Walter Roberson]

Those functions appear to be part of http://www.mathworks.com/matlabcentral/fileexchange/21993-viewer3d or http://www.mathworks.com/matlabcentral/fileexchange/29344-read-medical-data-3d

[tareq]

hi guys

I downloaded the functions, copied the above code and applied it

But it shows me an error message

Which (Invalid field name: '0008|0020'.

Error in mha_read_header (line 78)

info.(type)=data;)

can someone help me with it

Answer 2

[divya B]

It worked follow these steps carefully:

1. click Download (rt most) in the following link

https://in.mathworks.com/matlabcentral/fileexchange/29344-read-medical-data-3d you will be able to download .rar file named as ReadData3D_version1K

2. export .rar

3. Open Matlab and add this folder to the path.

4. Write these following program in the .mfile/ command window

data = mha_read_header('complete .mha file path');

V = mha_read_volume('complete .mha file path');

imshow(squeeze(V(:,:,round(end/2))),[]);

5. run

DONE

BAAAAAAAAAAAAM!!!!!!!!!!!!!!!