Cropping 3D image into equal size

So i wan't to crop all 594x397x7 with 5x5x7.

But there is problem when '594' reach the number of '190'. here is the code and error.

i tried switching 'for' command but it doesn't work

stackc=cat(3,R1, R2, R3, R4, R5, R6, R7)

[rows, columns, numberOfColorChannels] = size(stackc);

for  i = 1:rows
  for j = 1:columns
%     for k = 1:numberOfColorChannels
%       myVal = stackc(i,j,numberOfColorChannels);
      c = images.spatialref.Cuboid([i,(i+4)],[j,(j+4)],[1,7]);
      A{i} = imcrop3(stackc,c)
      j+4;
      i+4;
      if j>190 && i==190;
          j=0;
      end
      %save(['peak_col' num2str(i) '_row_' num2str(j) '.mat'],'A')
    end
end

and this is an error

Error using imcrop3>validateCuboidBounds (line 140)
The crop window is out of bounds of the input volume.
The lower bound should be >= 1 and the upper bound should not exceed the image size.

Error in imcrop3>parseInputs (line 95)
    isCuboidOutofBounds = validateCuboidBounds(V, xLimits, yLimits, zLimits);

Error in imcrop3 (line 44)
[V, xLimits, yLimits, zLimits, isCuboidOutofBounds] = parseInputs(varargin{:});

Error in croptest2 (line 29)
      A{i} = imcrop3(stackc,c)

[Walter Roberson]

      j+4;
      i+4;

What is the intention of those lines?

[Fadhurrahman]

@Walter Roberson so cropping line will be like (1,5,10,15....) instead of (1,2,3,4,5...) on 594x397

Answer 1

[Matt J]

If the idea is to split A into cell array cells, using imcrop3 is a little over-elaborate. Consider using mat2cell or download mat2tiles from,

https://www.mathworks.com/matlabcentral/fileexchange/35085-mat2tiles-divide-array-into-equal-sized-sub-arrays

A=rand( 594 , 397 ,7);

Acell=mat2tiles(A,[5,5,7])

Acell = 119×80 cell array
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    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}
    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×5×7 double}    {5×2×7 double}

whos Acell

  Name         Size               Bytes  Class    Attributes

  Acell      119x80            14195888  cell               

[Fadhurrahman]

@Matt J thank you. i'll try this one out.

is there any reference to extract every values in Acell?

[Matt J]

Does "extracting" mean something different to you then just addressing the cell?

Acell{i,j}

[Fadhurrahman]

@Matt J its the same.

anyway thank you very much, it works for me