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Discussion
Fraction of unexplained variance:
Hi All, I'm currently verifying a global sensitivity analysis done in SimBiology and I'm a touch confused. This analysis was ru...
mer än ett år ago | 0
Discussion
Integration Tolerance Bizarre Reaction:
Hi All, I've been producing a QSP model of glucose homeostasis for a while now for my PhD project, recently I've been able to e...
mer än ett år ago | 0
Discussion
Stacked bar chart for local sensitivity analysis
Hi All, I'm trying to produce some nice figures from the graphical user interface and have a set of local sensitivity analyse...
mer än ett år ago | 0
Discussion
Plotting Observables in the Analyzer
Hi All, I'm trying to plot my observables in the analyzer and running into far more problems than expected. I have two species ...
nästan 2 år ago | 0
Discussion
Simplifying rates with parameters:
The title is resonably non-descript, but I can explain it easily: Say I have an initial Emax model: v = emax1*[G]^n1/(ec501^n1...
ungefär 2 år ago | 0
Discussion
Voltage as a species unit
Hi All, I'm currently attempting to implement a Hodgkin-Huxley-type model of membrane potential, ideally I would like a species...
ungefär 2 år ago | 0
Discussion
Non-mass transfer graphical linkages
Hello, I've looked around and I haven't found anything obvious about this, but is it possible to link to species/reactions, gra...
ungefär 2 år ago | 0
Discussion
Dividing by compartment volume automatically:
Hello all, I've been trying to shift my workflow more towards simbiology, it has a lot of very interesting features and it ma...
ungefär 2 år ago | 0
Discussion
GSA plot aesthetics:
Hi All, I'm attempting to put a set of simbiology global sensitivity analysis plots into my thesis and I'm running into some is...
ungefär 2 år ago | 0
Discussion
Including volume programmatically with unknown kinetic laws:
Hi all, I've translated a model from another piece of software (monolix) into simbio programmatically to make use of your very ...
mer än 2 år ago | 0
Question
MATLAB resizing figures/Figures not displaying.
Hello all, I'm writing a program that fetches ODEs and variable values from some .txt model files, runs it all through ODE45 and...
nästan 5 år ago | 0 answers | 0
0
answersQuestion
Converting an array of ODEs as strings into functions for use in an ODE solver:
I'm currently writing a script in MATLAB to grab and convert a set of ODEs from a text file used in another piece of software as...
nästan 5 år ago | 0 answers | 0
0
answersQuestion
Simbiology stimulation reactions in custom PDPK models
Hello all, I've been using simbiology as part of an effort to run sensitivity analysis on a PDPK model as part of my masters....
mer än 5 år ago | 1 answer | 0
1
answerQuestion
Modelling a system of ODEs and need to add inputs after t=0?
Hi all, I'm testing a pharmacokinetic model in MATLAB, it's very stiff so I'm currently using ode15s, the system is comprised o...
mer än 5 år ago | 1 answer | 0
