Volume slice visualization gui
GUI for manipulating slices and isosurfaces over a volume.Control over color transparency, contours, and rendering techniques via menus.Original sliceomatic 1.0 for older versions of MATLAB is in the
3D volume viz with interactive slice selection, colored ortho-planes, windowing, colormap selection.
This tool provides an interactive 3D volume visualization. The function accepts as arguments any 3D matrix (of type double or uint8) and optional colormap, and displays a 2x2 figure of the 3
Source code files which go with the series of videos on volume visualization from Doug's Blog.
These are the source code files which generate the figures displayed in the volume visualization video series recently presented on Doug's Blog. These files are divided into cells which roughly
An app for the easy visualization of volume data ( 4D )
This is an interactive tool that helps with volume data visualization such as during the studies of fluid flow, electrical or electro magnetic fields etc. It contains its own built-in help.Data can
Visualize single- or multi-modal 2D or 3D images and corresponding segmentation
It can visualize single- or multi-modal 2D or 3D images in a selected plane, which can be switched.Modalities are switched by left slider, slices are changed by botom slider. Planes are switched by
4D (3D+1) volume visualization with windowing, custom colormaps, and component selection
A tool for visualizing vector-valued volumetric data, which has become more common recently in medical imaging (e.g., 3D + time, multi-modal acquisition). The function accepts a 4D matrix, allowing
Produce a 3D quiver of arrows with many visualization options
This quiver3D differs from the basic quiver3 in that it allows far more options for visualization. Based on the 'surf' command, you can produce color-based visuals of your data via the multiple
This tool helps to visualizes color volume by constructing a 3D gamut(s) given point cloud of color values.
This tool helps to visualizes color volume by constructing a 3D gamut(s) given point cloud of color values.Please visit GitHub page (https://github.com/QiuJueqin/Yet-Another-Color-Gamut-Visualizer
GUI for visualization of data volumes via slices, contour lines, isosurfaces, and animation.
This is release 1.03 of the Volume Browser, a simplified version of the 3-D volume viewer "V3D" written by Robert Barsch and available from the Matlab File Exchange, File ID 2255.If you already have
This is to visualize the functions of 3 variables: z=f(x,y,t), which becomes 4 dimensional problem
This is to visualize the functions of 3 independent variables ( v=f(x,y,z) ), which becomes 4 dimensional problem.It just uses the MATLAB function "slice", in an effective way, leading to
Volume Visualization and slicing
(translations and rotations) through a friendly user interface. It also visualizes the loaded volumes with planes indicates the slices positions and orientations with respect to the volume.Multiple slices can
This programs calculate and visualize the dice similarity (volume overlap) of 2D binary images.
This is a GUI for visualizing volume data. Includes rendering volumes, displaying isosurfaces.
Includes different types of visualization of three-dimensional array (volumetric data):1. Orthogonal slices - each slice individually, as well as three orthogonal slices on one plot2. Rendered volume
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
compartments(cell bodies, dendrites, axons) and (imaging) techniques (chronic glass windows, GRIN lenses, 1P, 2P).The SpecSeg toolbox contains user-friendly graphical interfaces to detect, adjust ROIs and visualize
Cytoarchitecture linked to gene expression to study multilevel human brain organization
user-defined candidate gene list between two user-defined volumes of interest (Julich-Brain maps or other volume of interest in MNI152 reference space [3]). The tool downloads expression values via the Allen
Test if 3d points are inside a mesh. Or, voxelise a mask from a surface. Mesh can be non-convex too!
gridded query points rather than an N-by-3 array of points. X, Y, and Z coordinates of the grid supplied in XVEC, YVEC, and ZVEC respectively. IN will return as a 3D logical volume with SIZE(IN) =
SoundVolume sets or gets the computer system's speaker sound volume, using Java
SoundVolume sets or gets the computer's system speaker sound volume Syntax: volume = SoundVolume(volume); SoundVolume(volume) sets the system speaker sound volume. The volume value should be
Computes the minimum-volume covering ellipoid that encloses N points in a D-dimensional space.
[A , c] = MinVolEllipse(P, tolerance)Finds the minimum volume enclosing ellipsoid (MVEE) of a set of data points stored in matrix P. The following optimization problem is solved: minimize
3-d volume (voxel) rendering
ASL Viewer visualize peak time map from 4D volume data (time-sequential 3D) of ASL (arterial spin labeling).
Turns thin surfaces into closed solids by adding a flat base or offsetting by a given thickness.
specify the X and Y spacing between grid points. SURF2SOLID(...,'PropertyName',VALUE,...) makes a solid volume from thin surface using any of the following property/value options: ELEVATION - Extends
Import, export, process, and visualize hyperspectral data
Image Processing Toolbox™ Hyperspectral Imaging Library provides MATLAB® functions and tools for hyperspectral image processing and visualization.Use the functions in this library to read, write, and
MATLAB and Simulink utilities for vehicle kinematics, visualization, and sensor simulation.
, including forward and inverse kinematics- Configurable lidar, object, and robot detector simulators - Visualization of robotic vehicles and sensors in occupancy maps- MATLAB and Simulink examples and
Volume Render GUI with mouse change able color and alpha maps
This is a Fast Volume Render application, using OpenGL surfaces. Color and alpha maps can be changed on the fly by dragging and creating markers in a histogram with the mouse.Note:There is a bug /
Export a variety of inputs (patch, surface) to an STL triangular mesh
volume tmpvol(8:12,8:12,5:15) = 1; % Turn some voxels on fv = isosurface(~tmpvol, 0.5); % Make patch w. faces "out" stlwrite('test.stl',fv) % Save to binary .stl Example 2
Exports 2D/3D image volume, vector field, surface, lines, polygons, etc. to ParaView
Paraview is a powerful open-source software for visualization of large 3D dataset. It offers more options, details and much better performance than built-in Matlab 3D visualization modules. This
Image to Volume Conversion for Representing Materials Topography
Version 1.0.0.0
Kateryna ArtyushkovaConverts a single image (microscopy, topogrpahy) into array of images.
Function for creating a volume (array of images) representing topography from a single image.topog=im2topography(afm_im,N,A);N - number of depths levels to describe. The larger N - more slices
Volumetric visualization of bone (or other tissue) density distribution from DICOM
(like bone)- Tridimensional smooth of the volume- Visualization of the data in 3D view
MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI
Maximum intensity projections (MIP), Volume Rendering (VR) , Slice render, and colored and Phong shaded Volume rendering.Voxel opacity and color tables can be changed on the fly allowing also iso surface
The function VISLABELS is used to visualize the output of BWLABEL.
VISLABELS is used to visualize the output of BWLABEL. VISLABELS(L), where L is a label matrix returned by BWLABEL, displays each object's label number on top of the object itself. Note: VISLABELS
Given a surface triangulation, compute the volume enclosed using divergence theorem.
Given a surface triangulation, compute the volume enclosed using divergence theorem. Assumption:Triangle nodes are ordered correctly, i.e.,computed normal is outwardsInput: p: (3xnPoints), t
3D Volumetric fMRI visualization
visualizations of brain imaging data. Volumetric easily allows layering and displaying multiple channels of data. It features Volumetric rendering which allows for transparent solids that change color and
Two dimensional (2D) conservative shallow water equations solved using a finite volume method
Plot a 3D matrix as a semitransparent volume
Note: This function does not yet work for Matlab 2014b or later. This function plots a 3D data volume as color-scaled semitransparent surface planes in each
Volume explorer tool by 3 orthogonal slices
Orthogonalslicer creates 3 figures showing the 3 orthogonal slices from a scalar volume of data. Cross lines on each image represents lines of intersection of the appropriate plane and the two other
Enable custom workflows for labeling volumes and isosurfaces in your MATLAB app.
own custom MATLAB app.https://www.mathworks.com/help/releases/R2020b/images/ref/volumeviewer-app.htmlWidgets provided in this toolbox include:Image Stack / Volume Visualization and Annotation
Compute the overlap volume between 2 spheres defined in an array
Compute the overlap volume between 2 spheres defined in an array.Computation is vectorized, and intersection volume are computed ananalytical way.Input: spheres data presented in an array G of four
Easy to use, GUI based tool to analyze, validate, postprocess, visualize and simulate (micro) PIV data. Optional parallel computing.
This function transforms a volume by using an affine transformation matrix.
This function transforms volume 'old_im' by means of affine transformation matrix 'M'. The output volume can be sub- and oversampled. The function makes use of interp3, so 'nearest', 'linear
Volume rendering app in MATLAB to visualize gray scale and labeled volume data.
Checkout the README of the project on GitLab: https://gitlab.com/tim.vandelooverbosch/volume_rendering_appFeatures:Simultaneous volume rendering of both gray scale and labeled volume dataLabeled data
A tool for visualizing phasor (voltage, current, impedance), along with animation.
Create a wind visualization
This is an example of how to create wind flow visualization in MATLAB®.Read about the "isosurface", "isonormals", "isocaps", "coneplot", "streamline", "patch", and "reducepatch" functions in the
Link viewpoints of different volume images, with the option of independently modifying view settings for each volume
MATLAB provides a volume visualization function (volshow) with the image processing toolbox, however objects created by this function do not operate with standard AXES type handles. Linking
Compute volume and area of triangulation using divergence theorem of Gauss
Computes the VOLUME and AREA of a closed surface defined by the triangulation in indices TRI and coordinates X, Y and Z, using the divergence theorem of Gauss (volume/surface integral). The unit of
A simple yet general purpose FVM solver for transient convection diffusion PDE
FVTool: Finite volume toolbox for MatlabTiny Documents 📘.FVTool in:Python: PyFVToolJulia: JFVM.jlFVToolThis is a finite volume (toy) toolbox for chemical/petroleum engineers.Right now, it can solve
Convert a volume defined by a surface to a binary 3D block.
Compute intersections of lines, planes, volumes, etc. in arbitrary dimensions.
App for exploring higher dimensional data using volumetric visualizations and animation.
This app provides an interactive environment to explore four and five dimensional data using some of MATLAB's abilities for volumetric visualization and animation. It was originally designed for data
Adaptive Lagrangian Digital Volume Correlation - volumetric displacement and strain measurement based on a hybrid local-global approach
Augmented Lagrangian Digital Volume Correlation (ALDVC): volumetric displacement and strain measurement based on a hybrid local-global approach. ALDVC is a fast, parallel-computing hybrid DVC
Quickly create publication-quality plots: automatic colors & subplots, stats, violin/box plots, etc.
(geom_interval()) - bars plots (geom_bar()) - raster plots (geom_raster()) - point counts (point_count())- Multiple ways of plotting statistical visualizations of the data: - y data summarized by x
Volume of a (hyper)sphere, sphere cap, or any band through a sphere defined by two parallel planes
This tool computes the volume inside a sphere in n dimensions, or inside a sphere cap, or inside any part of a sphere that can be defined by two parallel slicing planes. Compute the volume of a unit
A hyper-plane in SVM classifier was visualized. 3変数にてSVMを使い、分類を行うときの分離曲面を可視化します。
Read a series of dicom slice images to a 3D volume image and meta data.
This function reads all good dicom files in a given directory and outputs a volume image. The slices are sorted by the SliceLocation tag in the image header. If no directory is specified, it opens
Open Volume Controdoes open in Windows the volume control.
>> opensoundcontrol does check if the machine is running Windows and opens the Windows Volume Control Dialog. It's an easy way to open the Volume control to modify the loudness of Windows Sound
Programs that solve the compressibility factor (by MOSS iteration) and molar volume, and pressure of a substance at the given state
(iterative) approach. Then the molar volume is solved. The second program solves for the pressure. The input data required for the 1st program are Pressure, Temperature, Critical Pressure and Temperature (if
Intensity normalization of Brain volume given a reference volume
This software adjust the intensity levels of a NIfti file containing a brain according to a reference volume.The two algorithms are based on Nyul et al. 2007 and Hellier 2009.It contains a nifti
Educational GUI to learn about Finite Volume Methods in 1D (linear and non-linear equations)
FVM 1DEducational graphical user interface (GUI), developed in Matlab R2018a, to learn about Finite Volume Methods in 1D (linear and non-linear equations).Additionally, I have included the report
Flow Cytometry Data Reader and Visualization Example
This includes a function to read in the standard flow cytometry FCS format data and examples of how to visualize the data.
ExtractSlice extracts an arbitrary slice, both intensities and indices, from a given volume.
ExtractSlice extracts an arbitrary slice, both intensities and indices, from the input volume given the center and normal of the slice. If you are familiar with IDL, this is the equivalent function