71 results

An app for the easy visualization of volume data ( 4D )

This is an interactive tool that helps with volume data visualization such as during the studies of fluid flow, electrical or electro magnetic fields etc. It contains its own built-in help.Data can

Simple tool for finite element based forward and inverse simulations in electromagnetic brain imaging applications.


version 2.0.0

by Tim

Voxelized volume visualization for 3D and 3D RGB arrays

VOXview is an easy-to-use function for visualizing small 3D scalar or RGB (i.e. MxNxO x3) arrays. This function was specifically designed to give the user independent control of voxel alpha

Source code files which go with the series of videos on volume visualization from Doug's Blog.

These are the source code files which generate the figures displayed in the volume visualization video series recently presented on Doug's Blog. These files are divided into cells which roughly

Enable custom workflows for labeling volumes and isosurfaces in your MATLAB app.

demonstrate a custom workflow for isosurface labeling and volume labeling.Widgets provided in this toolbox include:Image Stack / Volume Visualization and Annotation LabelingIsosurface Visualization and

A simple yet general purpose FVM solver for transient convection diffusion PDE

A simple Finite volume toolThis code is the result of the efforts of a chemical/petroleum engineer to develop a simple tool to solve the general form of convection-diffusion equation

Free-form cutter for volumetric images

smoothness level of interpolated surface + 4 different cut modes allowing to provide up to three cutting surfaces + Volume visualization using Matlab's 3D volume renderer + Save cut image volumes with black

This tool helps to visualizes color volume by constructing a 3D gamut(s) given point cloud of color values.

This tool helps to visualizes color volume by constructing a 3D gamut(s) given point cloud of color values.Please visit GitHub page (https://github.com/QiuJueqin/Yet-Another-Color-Gamut-Visualizer

3D volume viz with interactive slice selection, colored ortho-planes, windowing, colormap selection.

This tool provides an interactive 3D volume visualization. The function accepts as arguments any 3D matrix (of type double or uint8) and optional colormap, and displays a 2x2 figure of the 3

Visualization and quantification of spatiotemporal membrane signaling

This MATLAB package is used to extract, visualize, and quantify spatiotemporal membrane signaling of time resolved 3D confocal microscopy observed single cells. It provides - basic cell parameter

This app helps to understand and visualise three dimensional cylindrical coordinate system.

, surfaces and volume can be plotted. Also a point can be located and viewed.

This app helps to understand and visualise three dimensional cartesian coordinate system.

surfaces and volume can be plotted. Also a point and plane can be located and viewed.

Volume rendering app in MATLAB to visualize gray scale and labeled volume data.

Checkout the README of the project on GitLab: https://gitlab.com/tim.vandelooverbosch/volume_rendering_appFeatures:Simultaneous volume rendering of both gray scale and labeled volume dataLabeled data

Learning the Finite Volume Method in CFD with MATLAB Programming

uFVM is an academic CFD tool made for learning purposes. The main outcome of that is learning how to code the finite volume method. plenty of tutorials are available within the file that the user can

Visualize single- or multi-modal 2D or 3D images and corresponding segmentation

It can visualize single- or multi-modal 2D or 3D images in a selected plane, which can be switched.Modalities are switched by left slider, slices are changed by botom slider. Planes are switched by

4D (3D+1) volume visualization with windowing, custom colormaps, and component selection

A tool for visualizing vector-valued volumetric data, which has become more common recently in medical imaging (e.g., 3D + time, multi-modal acquisition). The function accepts a 4D matrix, allowing



by Martin Cousineau

Brainstorm: Open source application for MEG/EEG data analysis

The project defines a voronoi3d class, which can generate 3d voronoi polyhedrons from fem mesh and visualize them

of each face. Volumes and Centroids are the volume and centroid of each cell respectively.voronoi3dThis function can generate an empty voronoi3d object if no input is provided, e.g.voronoi3d_obj =

Volume Visualization and slicing

(translations and rotations) through a friendly user interface. It also visualizes the loaded volumes with planes indicates the slices positions and orientations with respect to the volume.Multiple slices can


version 1.0.4

by Tanguy

3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )

Image, volume or Nitfi viewer that features:- Up to 5-dimensional multi-spectral image or volume visualization- Navigate through time (4th dim) and volumes (5th dim) with arrows - Scroll slices, zoom


version 1.2

by Takuro Nakae

ASL Viewer visualize peak time map from 4D volume data (time-sequential 3D) of ASL (arterial spin labeling).

Iteratively combines clusters of visually intersecting disks in a scatter plot (avoiding quadratic complexity).

Avoid misinterpretation in scatter plots.Great for visualizing data as scatter-like button plot, where points would otherwise be displayed upon another. Visually overlapping disks are iteratively

This code calculates 2D/3D specific surface of porous media using 2D images

grains divided by their volume. In 2-D the definition is: perimeter of grains divided by their area.This code computes all of these parameters and visualizes the grain/pore boundaries. The unit is



by Eric Ludlam

Volume slice visualization gui

GUI for manipulating slices and isosurfaces over a volume.Control over color transparency, contours, and rendering techniques via menus.Original sliceomatic 1.0 for older versions of MATLAB is in the

Link viewpoints of different volume images, with the option of independently modifying view settings for each volume

MATLAB provides a volume visualization function (volshow) with the image processing toolbox, however objects created by this function do not operate with standard AXES type handles. Linking

Various tools for working with large point clouds

). However, if you want to work with point clouds and visualize them, or you need a more flexible and powerful ICP algorithm to align > 2 point clouds at once, this here might be the right solution for

I developed a shadow-based CT scan technique (using visible light instead of X-ray) to reconstruct 3D model of transparent objects.

there."A5_Final3DConstruction.m"; This script created the CT slices and after completing this stage you can open "Volume Viewer" app to import and visualise your data.

MIB2 is an update package for segmentation of multi-dimensional (2D-4D) microscopy datasets

With MIB2 you can analyse, segment and visualize various multidimensional datasets from both light and electron microscopy. MIB2 is completely rewritten to follow MVC architecture and brings

Simulate electromagnetic wave propagation through free-form apertures, or off rough surfaces. Speed up the computation by using the GPU.

jitter, to reduce diffraction by the input grid* the Huygens-Fresnel approximation* memory management, job resume if pre-existing data is found* some examples and visualizationsA theoretical background is

The modal parameters of a line-like structure are automatically identified using an SSI-COV algorithm applied to ambient vibration data

enough to visualise the evolution of the bridge eigenfrequencies with the temperature [4].contentThe submission file contains:A data file BridgeData.matA Matlab Live Script Example1.mlx that illustrates


version 2.0.1

by Mustafa Saraoglu

Model-based Autonomous Traffic Simulation Framework to develop automated driving algorithms and test them in an urban traffic environment.

visualization options.Consider starring our GitHub Repositories and subscribing to our MOBATSim YouTube Channel to support us!Autonomous Vehicle Modeling and Simulation in Simulink TutorialsTable of

Matlab-based software for measuring acoustic parameters and experiments.

impedance tube systemInformation panelResults visualizationThe impedance tube method is detailed in ISO 10534-2. In this software the measure has been implemented in full compliance with the standard.The

Script to visualise 2D wave equation with an initial Gaussian displacement

This script produces a mesh and colourmap to visualise the 2D wave equation in a confined control volume over a few hundred time intervals. It works by discretising the general 2D wave equation and

MATLAB application designed to visualize 6 different volumes together with slider for selecting slice.

MATLAB application designed to visualize 6 different volumes together with slider for selecting slice.To use open the app, select volume and view.

Computes the curve-skeleton of a binary 3D volume with the Gradient Vector Flow (GVF) method proposed by Brun and Dreossi (2010)

Computes the curve-skeleton of a binary 3D volume with the algorithm proposed in "F. Brun and D. Dreossi. Efficient curve-skeleton computation for the analysis of biomedical 3D images (2010

A set of examples of Monte Carlo numerical estimation methods.

of the worst-case resistor's power dissipation;MonteCarloSqrt2.m – estimation of the sqrt(2) value;MonteCarloVol.m – estimation of the unit sphere volume;MonteCarloVol_visualization.m – a visualization

Volumetric visualization of bone (or other tissue) density distribution from DICOM

(like bone)- Tridimensional smooth of the volume- Visualization of the data in 3D view

This is an implementation of the method proposed in my papers

Input: CT volume of FDM 3D printoutput: build direction and layer-by-layer inspectionProgramer: Yifan YangHomepage: https://www.researchgate.net/profile/Yifan-Yang-79See the main papers or contact

A statistics toolbox for neuroimaging.

. It implements both univariate and multivariate linear modelsand interfaces with the BigBrain Atlas, Allen Human Brain Atlas and Nimaredatabases. BrainStat flexibly handles common surface, volume, and

unsupervised disparity map segmentation for road damage detection

Ozgunalp, Umar and Hosking, Brett and Liu, Ming and Pitas, Ioannis}, journal={IEEE Transactions on Image Processing}, volume={29}, pages={897--908}, year={2020} }@inproceedings{fan2019real, title={Real-time

Fundamental solution of the basic potential flow

This code allow to visualize the solution of the basic potential flow by phi (velocity potential) and psi (streamfunction) assigned the following input parameters: U (velocity), gamma (circulation) Q

GUI to open most Medical file-formats: Dicom, V3D, ISI, NifTI, Analyze and other formats

Lab ( .gipl ) HDR/IMG Analyze ( .hdr ) ISI Files ( .isi ) NifTi ( .nii ) RAW files ( .raw , .* ) VMP BrainVoyager ( .vmp ) XIF HDllab/ATL ultrasound ( .xif ) VTK Visualization

Visualization of distribution in RGB or HSV space.

These codes compute and visualize the RGB and HSV distribution (or histogram) of a given image. The volume of each volume element is proportion to the percentage of the correspondent RGB or HSV value.

3D volume visualization - with the light source always coming from the direction of the viewer

A light source is necessary to accurately display a 3D surface visualization in Matlab. When rotating a 3D volume using the standard tools, the light source illuminates the surface from the direction

Exports 2D/3D image volume, vector field, surface, lines, polygons, etc. to ParaView

Paraview is a powerful open-source software for visualization of large 3D dataset. It offers more options, details and much better performance than built-in Matlab 3D visualization modules. This

GUI for visualization of data volumes via slices, contour lines, isosurfaces, and animation.

This is release 1.03 of the Volume Browser, a simplified version of the 3-D volume viewer "V3D" written by Robert Barsch and available from the Matlab File Exchange, File ID 2255.If you already have



by Dirk-Jan Kroon

MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI

Maximum intensity projections (MIP), Volume Rendering (VR) , Slice render, and colored and Phong shaded Volume rendering.Voxel opacity and color tables can be changed on the fly allowing also iso surface

This programs calculate and visualize the dice similarity (volume overlap) of 2D binary images.

Enhancement of Vessel/tube and blob/sphere like structures in 2D/3D images using hessian eigenvalues

), doi={https://doi.org/10.1109/TMI.2016.2550102} - T. Jerman, F. Pernus, B. Likar, Z. Spiclin, "Blob Enhancement and Visualization for Improved Intracranial Aneurysm Detection", IEEE Transactions on Visualization and Computer Graphics

Produce a 3D quiver of arrows with many visualization options

This quiver3D differs from the basic quiver3 in that it allows far more options for visualization. Based on the 'surf' command, you can produce color-based visuals of your data via the multiple

This is to visualize the functions of 3 variables: z=f(x,y,t), which becomes 4 dimensional problem

This is to visualize the functions of 3 independent variables ( v=f(x,y,z) ), which becomes 4 dimensional problem.It just uses the MATLAB function "slice", in an effective way, leading to

A tool to draw Leveldiagrams for Pareto Set/Front, allowingsome basics graphics manipulations.

help in decision making. Details about Leveldiagrams and some examples supplied in this toolbox are described in:[1] X. Blasco, J.M. Herrero, J. Sanchis, M. Martínez. A new graphical visualization of

A toolbox facilitating Deep Brain Stimulation electrode reconstructions and computer simulations based on postoperative MRI & CT imaging.

electrode localization- Visualization of results in 2D slice views- Visualization of a 3D model showing DBS electrodes and their target areas- Calculation of the Volume of Activated Tissue (VAT) and

GUI enables crystallographic computations for all seven crystal systems

plane•Computes the direction that is normal to a plane•Computes plane that is normal to a specified direction•Calculates unit cell volume•Plots the stereographic projection of both poles and directions on a Wulff

This is a GUI for visualizing volume data. Includes rendering volumes, displaying isosurfaces.

Includes different types of visualization of three-dimensional array (volumetric data):1. Orthogonal slices - each slice individually, as well as three orthogonal slices on one plot2. Rendered volume

This code developed to compute and visualize the connectivity between images in SfM

Vosselman, G. (2013) Robust extraction of image correspondences exploiting the image scene geometry and approximate camera orientation. In: ISPRS Archives Volume XL-5/W1 : Proceedings of 3D-ARCH 2013 : 3D

Three counter-intuitive examples of how data behave in Multidimensional Euclidean Space.

This submission provides three examples of at least paradoxical phenomena that happen in higher dimensions: Example A proves that the greatest volume part of a hypercube is concentrated at its

Converts a single image (microscopy, topogrpahy) into array of images.

Function for creating a volume (array of images) representing topography from a single image.topog=im2topography(afm_im,N,A);N - number of depths levels to describe. The larger N - more slices

It reads a 3D raw image and show the mid cross-section of the raw volume image

for this program to run. The code could be easily modified to show the sagittal and/or coronal planes for additional verification and visualization.

A user friendly GUI for the segmentation and quantification of small animal and human PET images

. The parameters needed for accurate SUV quantification are inputted by the user and clearly shown in the GUI. The SUVmax, SUVmean, and Volume (mm^3) of the pathologies are calculated and can be exported

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