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Exporting SimBiology model with custom units

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R Andreev
R Andreev on 21 May 2021
Answered: Florian Augustin on 24 May 2021
I get this error
An error occurred parsing the unit composition
trying to export a model (attached) that has a species with unit uM, defined as micromolarity in the "Library":
sbmlexport(sbioloadproject("test.sbproj").m1)
Any insights?
Thanks.

Answers (1)

Florian Augustin
Florian Augustin on 24 May 2021
Hi,
Thank you for reporting this issue. There is a bug in sbmlexport, it should be able to export your custom unit. We are looking into a fix. As a workaround I suggest to define your custom unit uM in terms of micromole/liter:
% Remove the old unit
uM = sbioselect(sbioroot, "Name", "uM");
sbioremovefromlibrary(uM);
% Add the new unit
customUnit = sbiounit("uM", "micromole/liter");
sbioaddtolibrary(customUnit);
Best regards,
Florian

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