How can I write a 4 dimensional Tiff from a 4D matrix?
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I'm trying to convert 4d matrix (XYCZ) into a Tiff that will have also have the required metadata information such as the voxel resolution. I've tried looking at functions such as bfsave, from the bio-formats group but the file size is 4 times bigger (as well as generating issues when trying to apply the original metadata - extracted from bfopen - to the 4d matrix). Is there a faster way?
Ultimately I'm trying to generate an image that can be read by standard microscopy software such as Neurolucida, and FIJI/ImageJ
Thanks in advance,
Marcus
3 Comments
Walter Roberson
on 17 Jan 2020
If I understand correctly, ImageJ cannot read 4D tiff files. Instead it reads 3d tiff sequences with the help of some metadata.
Marcus Leiwe
on 17 Jan 2020
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