niftiwrite changes the axis of 3D images
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After performing some image processing in a 3D .nii format nifti image, I am using niftiwrite function to save it. But the nifti image is being saved in opposite axis like the anterior axis is being saved as posterior and vice versa, and the left to right ...
I am using itk-snap to visualize the saved image.
6 Comments
Jacob Bunyamin
on 14 Feb 2023
I tried load and re-save but it did not work. Permute and flip did not work either for me
Anand Joshi
on 15 Jun 2023
Are you using info option when you use niftiwrite?You can get it using niftiinfo and then use it for niftiwrite.
Answers (1)
Anmol Dhiman
on 28 Aug 2019
Refer the below links to view the .nii images.
2 Comments
Charly Girot
on 3 Mar 2021
Thanks for the tool but this does not answer the issue he was referring to
Zahra
on 10 Mar 2023
I have exactly the same problem. I would be grateful if someone finds a solution to this problem share it with me.
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