In your code the line:
[net, TR]=train(net,in,out);
stores all the essential information in the structure variable "TR". To get the Epoch vs. MSE data corresponding to the training, validation, and testing set all we have to do is store them in some variables for each network size such as
train_mse = TR.perf ;
val_mse = TR.vperf;
test_mse = TR.tperf;
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