U-net for image segmentation
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I was wondering if it is possible to download U-net (https://lmb.informatik.uni-freiburg.de/people/ronneber/u-net/) for use as a pretrained convolutional neural network for Matlab for medical image segmentation.
2 Comments
Christopher Thomas
on 25 Jun 2018
Hi Joseph Stember, did you get U-net downloaded and working in Matlab?
HARADHAN CHEL
on 6 Mar 2020
In matlab documentation, it is clearly written how to build and train a U-net network when the input image and corresponding labelled images are stored into two different folders. But Surprisingly it is not described how to test an image for segmentation on the trained network. For testing images, which command we need to use? is it semanticseg? . Unfortunately this method is not working and not producing any result.
Answers (3)
Moucheng Xu
on 16 Aug 2018
I think you can look at this one: https://www.mathworks.com/matlabcentral/answers/uploaded_files/107430/createUnet.m
This is a function I found online by mathworks for a modified version U net, I reproduced my own implementation of U net referring to this function so I could make other versions.
3 Comments
Yan Ma
on 10 Sep 2019
HI Moucheng, I have downloaded the code from the Internet.It generated a U-net network.I want to know how can I ues the LayerGraph to train the dataset?
mohd akmal masud
on 12 Aug 2021
Edited: mohd akmal masud
on 12 Aug 2021
Hi Moucheng Xu,
https://lmb.informatik.uni-freiburg.de/people/ronneber/u-net/
Is it this code can run in Matlab?
Kris Fedorenko
on 25 Aug 2017
Hi Joseph,
According to the documentation of u-net, you can download the ready trained network, the source code, the matlab binaries of the modified caffe network, all essential third party libraries and the matlab-interface for overlap-tile segmentation. Best bet would be to use the same setup as recommended by u-net, i.e. Ubuntu Linux 14.04 and Matlab 2014b (x64).
You might also find of interest the image segmentation functionality in the Image Processing Toolbox:
Hope this helps!
Kris
3 Comments
Ahmed
on 7 Oct 2020
Hi Chris,
I want to apply UNet to segment weed plants, how can I label the images?
Regards
Birju Patel
on 9 Jun 2022
The network you pointed to was trained in Caffe. You can use importCaffeNetwork to import this pretrained U-Net network:
https://www.mathworks.com/help/deeplearning/ref/importcaffenetwork.html
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