Merge two 3D masks

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Demy
Demy on 30 Mar 2023
Answered: Image Analyst on 30 Mar 2023
I have a 3D mask with zero bahground and 3 labels 10 = Ventricles, 20=White matter, 30=Grey matter. I also have a 3D mask with tumour segmentation showing necrosis=1, tumor=2, edema=4.
I would like to merge these two segmentations in a single mask. Any help how to do this?
  2 Comments
Rik
Rik on 30 Mar 2023
Do you just want to add them up? Or do you want to define new numeric labels for each unique combination?
And what have you tried yourself?
Demy
Demy on 30 Mar 2023
Edited: Demy on 30 Mar 2023
I have added the two metrices:
brain_mask + tumor mask
But I want to first change the values in tumor segmentation from 1, 2 and 4 to make them 50, 60 and 70 for example. And then add these two matrices

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Answers (1)

Image Analyst
Image Analyst on 30 Mar 2023
Try this:
tumor_mask(tumor_mask == 1) = 50;
tumor_mask(tumor_mask == 2) = 60;
tumor_mask(tumor_mask == 4) = 70;
combinedLabeledImage = brain_mask + tumor_mask;
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