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Analysis of 3-D Structures of Biological Molecules

Analyze and visualize 3-D structures of proteins and other biomolecules

Analyze PDB structures of proteins and other molecules by performing linear transformations, superposing the coordinates, and generating Ramachandran plots.


pdbtransformApply linear transformation to 3-D structure of molecule
pdbsuperposeSuperpose 3-D structures of two proteins
pdbreadRead data from Protein Data Bank (PDB) file
pdbwriteWrite to file using Protein Data Bank (PDB) format
pdbdistplotVisualize intermolecular distances in Protein Data Bank (PDB) file
ramachandranDraw Ramachandran plot for Protein Data Bank (PDB) data