phytreeviewer

Visualize, edit, and explore phylogenetic tree data

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Syntax

phytreeviewer

phytreeviewer(Tree)

phytreeviewer(File)

Description

phytreeviewer opens the Phylogenetic Tree app that allows you to view, edit, and explore phylogenetic tree data.

phytreeviewer(Tree) loads a phytree object Tree into the app.

phytreeviewer(File) loads data from a Newick or ClustalW tree formatted file into the app.

example

Input Arguments

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`Tree` — Phylogenetic tree
`Phytree` object

Phylogenetic tree, specified as a Phytree object created with the functions phytree or phytreeread.

`File` — Newick or ClustalW tree formatted file
character vector | string

Newick or ClustalW tree formatted file, specified as a character vector or string containing the file name, a path and file name, or a URL pointing to the file.

Examples

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View a Phylogenetic Tree

Open Live Script

This example shows how to view a phylogenetic tree.

Load a sample phylogenetic tree.

tr= phytreeread('pf00002.tree')

    Phylogenetic tree object with 33 leaves (32 branches)

View the phylogenetic tree.

phytreeviewer(tr)

Figure Phylogenetic Tree 1 contains an axes object. The axes object contains 72 objects of type line. One or more of the lines displays its values using only markers