nwalign
Globally align two sequences using Needleman-Wunsch algorithm
Syntax
Description
returns the optimal global alignment score in bits after aligning two sequences
Score
= nwalign(Seq1
,Seq2
)Seq1
and Seq2
. The scale factor used to
calculate the score is provided by ScoringMatrix
.
uses additional options specified by one or more name-value arguments.Score
= nwalign(Seq1
,Seq2
,Name=Value
)
Examples
Input Arguments
Name-Value Arguments
Output Arguments
References
[1] Durbin, Richard, Sean R. Eddy, Anders Krogh, and Graeme Mitchison. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. 1st ed. Cambridge University Press, 1998.
Version History
Introduced before R2006a
See Also
aa2int
| aminolookup
| baselookup
| blosum
| dayhoff
| gonnet
| int2aa
| int2nt
| localalign
| multialign
| nt2aa
| nt2int
| nuc44
| pam
| profalign
| seqdotplot
| swalign