59 results

This Matlab code implements a segmentation method using local Gaussian distribution fitting energy.

This Matlab code implements a segmentation method using local Gaussian distribution fitting energy, proposed by Li Wang et al's in the paper "Active Contours Driven by Local Gaussian Distribution

A new online region-based active contour model (ORACM) is proposed in this paper.

A new online region-based active contour model (ORACM) is presented.The computational cost of ORACM is 3.75 times less than the traditional active contour models.ORACM suitable for real-time image

Finds foreground and background regions using level sets and active contours.

This code implements the well-known Chan-Vese segmentation algorithm from the paper "Active Contours Without Edges."This technique deforms an initial curve so that it separates foreground from

Example files for "Image Processing Made Easy" Webinar, first delivered Feb 27, 2014.

This package implements the localized active contour method using level set method

Description:This package implements the following papers:[1] S. Lankton and A.Tannenbaum.'Localizing Region-Based Active Contours'. IEEE Trans on Image Proceesing 2008.[2] A Yezzi Jr, A Tsai, A

Implementation and demonstration of several active contours segmentation methods.

paper "Active Contours without Edges" by Tony Chan and Luminita Vese. We wrapped it up with a GUI to allow easy parameters change and segmentation process view and results storage for future analysis

Compare the performance of different level sets and active contours methods.

of six level-set methods that have been chosen in order to cover a wide range of data attachment terms (contour, region and localised approaches). The software also gives the possibility to compare the

Very fast implementation of level sets. 2D and 3D support, written in C++/MEX with MATLAB wrapper.

Active contour methods for image segmentation allow a contour to deform iteratively to partition an image into regions. Active contours are often implemented with level set methods because of their

A Characteristic Function-based Algorithm for Geodesic Active Contours

We use characteristic functions to implicitly represent the contours, propose a new representation to the geodesic active contours, and derive an efficient algorithm termed the iterative

We incorporate gradient information and probability scores from a classifier to construct ESF.

, we propose a framework to construct a group of ESFs for edge-based active contour models to segment objects with poorly defined boundaries. In our framework, which incorporates gradient information as

Level Set; additive bias correction model; Intensity inhomogeneity ;image segmentation;Active contour model;

implementation of a well known level set method, easy to read code

demonstration purpose.Acknowledgement: Li chunming for his clearly coded distribution:http://www.mathworks.com/matlabcentral/fileexchange/12711-level-set-for-imReference:[1]. T. Chan and L. Vese, “Active contours

Magnetostatic Field for Active Contours

My implementation of:Magnetostatic Field for the Active ContourModel: A Study in ConvergenceI dont find it that useful

Snake Segmentation (Kass et al), 2D/3D including GVF and balloon force (Easy to read code)

These functions implements the basic snake segmentation contour, as introduced by Kass et al. Algorithm:A snake is an active (moving) contour, in which the points are attracted by edges and other

a novel external force for active contours, called adaptive diffusion flow (ADF), is proposed.

GVF is an effective external force for active contours, however, there is still room for improvement. the proposed ADF is one improvement. I am an experienced author of several extensions of the GVF

This program try to segment eye disk area using luminance channel and active contour.

This program try to segment eye disk area using two method: luminance based and active contour. For the active contour I use Snake by Dirk-Jan Kroon

Implements snakes or active contour models for image segmentation.

This demo implements the Active Contour Models as proposed by Kass et al.To run it with GUI 1. Type guide on the matlab prompt. 2. Click on "Go to Existing GUI" 3. Select the snk.fig file in


version 1.0.4

by Tanguy

3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )

)- Active contour, slice interpolation for ROI- Grayscale or RGB color, gamma correction- histograms, statistics- mouse controls * imtool3D: standard viewer * imtool3D_3planes: 3 slicing planes viewer *

Interactively Create Mask, and Semi-Automatically Label Volume Data Using 3-D Active Contour on the Labeler App

example, this tool enable you to label XZ slice images on another figure window and then you can use active contour method on this tool to segment target object by using labels as an initial mask.Segmented

Mainly implement three Chan Vese active contour ideas.

Implement following papers:1.Chan, T. F., & Vese, L. A. (2001). Active contours without edges. IEEE Transactions on Image Processing, 10(2), 266‐277.2.Chan, T.F., & Sandberg Y. B(2000

Fundus Image Segmentation

based active contour method is used for edge detection and Morphoplogical operations are used to remove the background from the foreground fundus image. This methodology is suitable for different fundus

A toolbox for the computation of the Fast Marching algorithm in 2D and 3D.

We present a new distribution metric for image segmentation for active contours.

set methods, we incorporate an energy model based on the metric into the Geometric Active Contour framework. We also demonstrate the algorithm on several challenging medical images, which further

16 State of the art image segmentation methods are compared with 117 MRI LV images

(zhenzhou_threshold_selection_updated.m), Adaptive thresholding (adaptivethreshold.m and averagefilter.m), Active contour without edge(region_seg.m), Region-based active contour(local_AC_MS.m and local_AC_UM.m), GM(CMF_Cut.m), Level set

This toolbox provides some functions to segment an image or a video using active contours

This toolbox provides some functions for manipulating planar, closed splines to implement image or video segmentation by means of deformable (or active) contours. Contour topology is managed in a way



by Mohammed Abdelsamea

Self Organizing Active Contour Model

This code is the implementation of the paper: M. M. Abdelsamea, G. Gnecco, M. M. Gaber, An Efficient Self Organizing Active Contour Model for Image Segmentation, Neurocomputing, in press

an effective external force for active contours, extended from VEF model

following papers for details:1. Yuanquan Wang, and Yunde Jia, Convolutional virtual electric field external force for active contours, in Proc. Asia Conf. Computer Vision, 2009.2. Wang Y, Jia Y (2008

Converts 3D and 2D MATLAB plots to the scalable vector format (SVG).

active figure or> plot2svg('myfile.svg', figure handle, pixelfiletype) pixelfiletype = 'png' (default), 'jpg' Supported Features- line, patch, contour, contourf, quiver, surf, ...-



by Alec Jacobson

Useful functions for geometry processing, constrainted optimization and image processing.

A threshold selection method based on slope difference distribution

In an image containing multiple apples, the histogram is plotted based on the size of apples present in the image into the three bin size.

of size of apples in an image.Color clustering is done to separate the images from the background.Used active contour to segment the objects in the image.Based on the color threshold, the segmentation

The active geometric shape model is a novel approach for fitting geometric shapes in images.

For details, see this paper: Quan Wang, Kim L. Boyer, The active geometric shape model: A new robust deformable shape model and its applications, Computer Vision and Image Understanding, Volume 116

Collection of some "little" functions I wrote to make my life easier.

ExchangeinsertTemplateHeader - inserts a predefined header template into an active script; there are a number of similar functions on the MathWorks exchange. As far as I could find, these typically create a new script with the

MRI and CT bone segmentation using snakes. Active contours

Segmentation using active contour without edges and multi-scale acceleration. GUI included

. Chan and L. Vese, "Active contours without edges"IEEE Trans.Img.Proc., vol. 10, pp. 266–277, 2001.[3] W. L. Briggs, V. Emden Henson, S. F. McCormick"A Multigrid Tutorial", SIAM, Philadelphia, 2001.

This Matlab code implements an edge based geometric active contour model without reinitialization.

computationally more efficient than conventional level set formulations.This package only implements an edge-based active contour model as one application of DRLSE. More applications of DRLSE can be found in other

The GUI is easy to access and reduces the load of ophthalmologists in analyzing the retinal profile.

The retinal blood vessels are enhanced using CLAHE and segmented using Fuzzy C-Means. The edges are detected using Region based active contour method. The performance of the algorithm is highly

Select points at a user-specified zoom level that moves around the image as you click.

Tristan UrsellNovember 2013Active zoom for polyline

Cootes 2D/3D Active Shape & Appearance Model for automatic image object segmentation and recognition

This is an example of the basic Active Shape Model (ASM) and also the Active Appearance Model (AAM) as introduced by Cootes and Taylor, 2D and 3D with multi-resolution approach, color image support

SB-GCS, L1 regularized fast, convex, level set segmentation technique

This Matlab code implements an edge-based active contour model as an application of the Split Bregman Globally Convex Segmentation (SP-GCS) formulation in Goldstein et al's paper:Tom Goldstein

Collection of functions and examples of parametric active model.

Active Model Toolbox (AMT) provides the neccessary infrastructures to get started with active contours. It also provides two examples for users to learn from. It is based two publications[1] Bing Li



by Aldo Zaimi

AxonSeg is a GUI that performs axon and myelin segmentation on histology images.

Shape Context based nonrigid registration of 2D/3D objects, to build Active Shape Models

Shape Context is a method to get an unique descriptor (feature vector) for every point of an object contour or surface. This descriptor is used in combination with a b-spline free form deformation

2D/3D image segmentation using level-set based active contour/surface with AOS scheme

Features of the toolbox: (1)The toolbox includes classic level-set methods such as geodesic active contours (GAC), Chan-Vese model and a hybrid model combining the boundary and regional terms.(2)All

a robust active contour model based on SOM for intensity inhomogenity

Computer vision approach to intuitive baseline drift estimation for single-molecule data series.

used.snakeLevelRefinement: Boolean indicating whether or not to refine the identified levels using active contour snakes.maxSnakeIter: Maximum number of snake refinement iterations. Default value of 50 seems to nearly always

Unsupervised image segmentation based on level sets and Neural Network

Snake Algorithm

version 1.0

by Iman

The goal is to find a contour that best approximates the perimeter of an object.

Snakes, or active contours, are curves defined within an image domain that can move under the influence of internal forces coming from within the curve itself and external forces computed from the



by Kesh Ikuma

Fills an area with hatching or speckling (Updating original hatchfill by Neil Tandon)

CONTOUR objects are additionally supported. Pre-HG2 (pre-R2014b) MATLAB releases are no longer supported.* Supports 3D surfaces. Note: Hatching would not come out correctly on a curved surface.* Four types

A tutorial on detection of retinal vessels by Gabor transform and machine learning

): 1214-1222.http://www.ncbi.nlm.nih.gov/pubmed/16967806Sandberg, Berta, Tony Chan, and Luminita Vese. "A level-set and gabor-based active contour algorithm for segmenting textured images." UCLA Department of Mathematics CAM report. 2002

We implement the GVF force field on GeForce GPU using CUDA.

Gradient Vector Flow (GVF) snake is one kind of active contours - curves that can move within images to find the boundaries of objects. 3D active contours are also known as deformable models. GVF

A curve evolution approach for unsupervised segmetation of images with low depth of field

Firstly, saliency map is got from original image by using object detection method with a multi-scale reblurring model;Secondly, the initial curve is got unsupervisedly;Thirdly, an active contour

Optimally Oriented Flux curvilinear structure descriptor

Symmetry based Active Contour Model for Three Dimensional Vessel Segmentation'', ECCV 2010, pp. 720--734. clear opts; opts.spacing=0.4; result = oof3response(I, 0.4:0.4:2.8, opts); Return the result

For multiple 3x3 real symmetric matrices, vectorized matrix operations, support GPU computation

source:http://www.mathworks.com/matlabcentral/fileexchange/41612-optimally-oriented-flux-oof-for-3d-curvilinear-structure-detection3. Max W. K. Law and Albert C. S. Chung, “An Oriented Flux Symmetry based Active Contour Model for Three Dimensional Vessel Segmentation”, ECCV 2010, pp. 720 – 734.4. Max W. K. Law and Albert C. S

Snakes with class


by Cris Luengo

Implementation of snakes using a class to enable automatic display of the snake over an image.

This package implements snakes (active contours) through a class `dip_snake`. The function `snakeminimize` modifies the snake to move it to a lower energy configuration, which typically corresponds



by Mohammed Abdelsamea

Globally Signed Region Pressure Forces Model

This Matlab file demomstrates the proposed Globally Signed Region Pressure Forces(GSRPF) Levelset method as described in the following paper: M. M. Abdelsamea, S. A. Tsaftaris, Active contour model

This work presents a two phase image segmentation strategy using the level set method.

addition to be computational expensive, it has the limitation to very often lead to a local minimum because of the energy functional to be minimized is non-convex. In this work, we use the geometric active

Minimum Description Length optimization of PCA model for 2D/3D ASM model building

An Active Shape Model (ASM) can only be trained if we have a set of corresponding points between object contours (2D) or object surfaces(3D). Usually these corresponding points are found by manual