Curvature measure and visualization

Version 1.0.6.0 (535 KB) by Preetham Manjunatha
Measures the shape properties of the object boundaries and displays the curvature.
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Updated 31 Mar 2023
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Introduction

View Measure curvature and visualize on File Exchange Open in MATLAB Online

Measures the shape properties of the object boundaries and displays the curvature.

Original author: Dr. Meghan Driscoll
Modified and compacted/concised a complicated codebase by: Preetham Manjunatha

Thanks to Dr. Meghan Driscoll who kindly shared her code for academic purpose. If you use this code for visualization and other academic/research/any purposes.

Please cite:

Reference: Driscoll MK, McCann C, Kopace R, Homan T, Fourkas JT, Parent C, et al. (2012) Cell Shape Dynamics: From Waves to Migration. PLoS Comput Biol 8(3): e1002392. https://doi.org/10.1371/journal.pcbi.1002392

Important note: This code uses parfor to speed up the things. If you do not have the Matlab parallel computing toolbox. Please make 'parfor' as 'for' in this function.

%%%%%%%% This code is way too slow! (curvature should not be in a for loop) %%%%%%%%% If I have time I will try to improve this. If anyone improves it, please share the modified version code with me.

Quick Pipeline Visualization

Example: Curvature visualization

Blob
blobviz
T-section
Tsectionviz 3

Requirements

MATLAB
MATLAB - Parallel Computing Toolbox

Feedback

Please rate and provide feedback for the further improvements.

Cite As

Preetham Manjunatha (2024). Curvature measure and visualization (https://github.com/preethamam/CurvatureVisualize/releases/tag/1.0.6), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2021a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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Version Published Release Notes
1.0.6.0

See release notes for this release on GitHub: https://github.com/preethamam/CurvatureVisualize/releases/tag/1.0.6
1.0.5

See release notes for this release on GitHub: https://github.com/preethamam/CurvatureVisualize/releases/tag/1.0.5
To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.