BrainSlicer
BrainSlicer is a MATLAB-based visualization tool for volumetric brain data. Its main purpose is to produce publication-level figures.
BrainSlicer main functionalities include:
- possibility of overlaying multiple images with tunable opacity.
- thresholding and clusterization of each layer
- visualize colorbar for each desired layer
- handy visualization of p-value maps as (1-p)
- ~ 100 colormaps available (including FSL and brain colours maps)
BrainSlicer is composed of three main programs:
-
slicer.m
- the main tool, visualizes and prints nifti images. -
slicerCollage.m
- combines several images produced byslicer.m
in a single figure. -
colormaps.m
- shows all the available colormaps and their code for ease of selection.
REQUIREMENTS
BrainSlicer requires:
- SPM
- MATLAB version >= R2014b
EXAMPLES
SlicerDemo.m demostrates the major functionalities of the toolbox using common usage examples.
Cite As
Daniele Mascali (2024). BrainSlicer (https://github.com/dmascali/BrainSlicer/releases/tag/1.1), GitHub. Retrieved .
MATLAB Release Compatibility
Platform Compatibility
Windows macOS LinuxCategories
- Sciences > Neuroscience > Human Brain Mapping > MRI >
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MNI
examples/data
subfunc
examples
Version | Published | Release Notes | |
---|---|---|---|
1.1 | See release notes for this release on GitHub: https://github.com/dmascali/BrainSlicer/releases/tag/1.1 |
||
1.0 |