dgattiwsu/MSAVOLVE_​v3.0a

Toolbox for the simulation and detection of coevolution in proteins
196 Downloads
Updated 17 Mar 2018

Suite of programs implementing various algorithms for the creation of synthetic data, and the detection of covariation between sequence positions in proteins using multiple sequence alignments.

Cite As

Domenico Gatti (2024). dgattiwsu/MSAVOLVE_v3.0a (https://github.com/dgattiwsu/MSAVOLVE_v3.0a), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2015a
Compatible with any release
Platform Compatibility
Windows macOS Linux
Categories
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COEVOLUTION_METHODS/COVARIATION_TUTORIAL

COEVOLUTION_METHODS/FUNCTIONS

COEVOLUTION_METHODS/FUNCTIONS/FastICA/FastICA_25

COEVOLUTION_METHODS/FUNCTIONS/GREMLIN

COEVOLUTION_METHODS/FUNCTIONS/GREMLIN/LLM2

COEVOLUTION_METHODS/FUNCTIONS/GREMLIN/minFunc

COEVOLUTION_METHODS/FUNCTIONS/GREMLIN/misc

COEVOLUTION_METHODS/FUNCTIONS/Graphical_Lasso

COEVOLUTION_METHODS/FUNCTIONS/Hopfield_Potts_PCA

COEVOLUTION_METHODS/FUNCTIONS/QUIC_MEX/QUIC

COEVOLUTION_METHODS/FUNCTIONS/QUIC_MEX/QUIC.mac

COEVOLUTION_METHODS/FUNCTIONS/RPCA/LRSD

COEVOLUTION_METHODS/FUNCTIONS/RPCA/apg

COEVOLUTION_METHODS/FUNCTIONS/RPCA/apg_partial

COEVOLUTION_METHODS/FUNCTIONS/RPCA/apg_partial/PROPACK

COEVOLUTION_METHODS/FUNCTIONS/RPCA/dual

COEVOLUTION_METHODS/FUNCTIONS/RPCA/dual/PROPACK

COEVOLUTION_METHODS/FUNCTIONS/RPCA/exact_alm_rpca

COEVOLUTION_METHODS/FUNCTIONS/RPCA/exact_alm_rpca/PROPACK

COEVOLUTION_METHODS/FUNCTIONS/RPCA/inexact_alm_rpca

COEVOLUTION_METHODS/FUNCTIONS/RPCA/inexact_alm_rpca/PROPACK

COEVOLUTION_METHODS/FUNCTIONS/RPCA/svt

COEVOLUTION_METHODS/FUNCTIONS/RPCA/ver_0.alpha

COEVOLUTION_METHODS/FUNCTIONS/freezeColors

COEVOLUTION_METHODS/FUNCTIONS/freezeColors/test

COEVOLUTION_METHODS/FUNCTIONS/gplm_DCA_asymm/gplmDCA_asymmetric

COEVOLUTION_METHODS/FUNCTIONS/gplm_DCA_asymm/gplmDCA_asymmetric/3rd_party_code/minFunc

COEVOLUTION_METHODS/FUNCTIONS/gplm_DCA_asymm/gplmDCA_asymmetric/3rd_party_code/minFunc/autoDiff

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_asymm/plmDCA_asymmetric_v2

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_asymm/plmDCA_asymmetric_v2/3rd_party_code/minFunc

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_asymm/plmDCA_asymmetric_v2/3rd_party_code/minFunc/autoDiff

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3/3rd_party_code/minFunc

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3/3rd_party_code/minFunc/autoDiff

COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3/functions

COEVOLUTION_METHODS/METHODS

MSAVOLVE/FUNCTIONS

MSAVOLVE/FUNCTIONS/DWINNEL_MI

MSAVOLVE/MSAVOLVE

MSAVOLVE/PLOTS

TUTORIAL

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
3.0.0.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.