dgattiwsu/MSAVOLVE_v3.0a
Version 3.0.0.0 (80.1 MB) by
Domenico Gatti
Toolbox for the simulation and detection of coevolution in proteins
Suite of programs implementing various algorithms for the creation of synthetic data, and the detection of covariation between sequence positions in proteins using multiple sequence alignments.
Cite As
Domenico Gatti (2024). dgattiwsu/MSAVOLVE_v3.0a (https://github.com/dgattiwsu/MSAVOLVE_v3.0a), GitHub. Retrieved .
MATLAB Release Compatibility
Created with
R2015a
Compatible with any release
Platform Compatibility
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COEVOLUTION_METHODS/COVARIATION_TUTORIAL
COEVOLUTION_METHODS/FUNCTIONS
COEVOLUTION_METHODS/FUNCTIONS/FastICA/FastICA_25
COEVOLUTION_METHODS/FUNCTIONS/GREMLIN
COEVOLUTION_METHODS/FUNCTIONS/GREMLIN/LLM2
COEVOLUTION_METHODS/FUNCTIONS/GREMLIN/minFunc
COEVOLUTION_METHODS/FUNCTIONS/GREMLIN/misc
COEVOLUTION_METHODS/FUNCTIONS/Graphical_Lasso
COEVOLUTION_METHODS/FUNCTIONS/Hopfield_Potts_PCA
COEVOLUTION_METHODS/FUNCTIONS/QUIC_MEX/QUIC
COEVOLUTION_METHODS/FUNCTIONS/QUIC_MEX/QUIC.mac
COEVOLUTION_METHODS/FUNCTIONS/RPCA/LRSD
COEVOLUTION_METHODS/FUNCTIONS/RPCA/apg
COEVOLUTION_METHODS/FUNCTIONS/RPCA/apg_partial
COEVOLUTION_METHODS/FUNCTIONS/RPCA/apg_partial/PROPACK
COEVOLUTION_METHODS/FUNCTIONS/RPCA/dual
COEVOLUTION_METHODS/FUNCTIONS/RPCA/dual/PROPACK
COEVOLUTION_METHODS/FUNCTIONS/RPCA/exact_alm_rpca
COEVOLUTION_METHODS/FUNCTIONS/RPCA/exact_alm_rpca/PROPACK
COEVOLUTION_METHODS/FUNCTIONS/RPCA/inexact_alm_rpca
COEVOLUTION_METHODS/FUNCTIONS/RPCA/inexact_alm_rpca/PROPACK
COEVOLUTION_METHODS/FUNCTIONS/RPCA/svt
COEVOLUTION_METHODS/FUNCTIONS/RPCA/ver_0.alpha
COEVOLUTION_METHODS/FUNCTIONS/freezeColors
COEVOLUTION_METHODS/FUNCTIONS/freezeColors/test
COEVOLUTION_METHODS/FUNCTIONS/gplm_DCA_asymm/gplmDCA_asymmetric
COEVOLUTION_METHODS/FUNCTIONS/gplm_DCA_asymm/gplmDCA_asymmetric/3rd_party_code/minFunc
COEVOLUTION_METHODS/FUNCTIONS/gplm_DCA_asymm/gplmDCA_asymmetric/3rd_party_code/minFunc/autoDiff
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_asymm/plmDCA_asymmetric_v2
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_asymm/plmDCA_asymmetric_v2/3rd_party_code/minFunc
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_asymm/plmDCA_asymmetric_v2/3rd_party_code/minFunc/autoDiff
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3/3rd_party_code/minFunc
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3/3rd_party_code/minFunc/autoDiff
COEVOLUTION_METHODS/FUNCTIONS/plm_DCA_symm/plmDCA_symmetric_v3/functions
COEVOLUTION_METHODS/METHODS
MSAVOLVE/FUNCTIONS
MSAVOLVE/FUNCTIONS/DWINNEL_MI
MSAVOLVE/MSAVOLVE
MSAVOLVE/PLOTS
TUTORIAL
Versions that use the GitHub default branch cannot be downloaded
Version | Published | Release Notes | |
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3.0.0.0 |
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To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.