qks1lver/gem2cytosc​ape

Version 1.0.0.0 (314 KB) by Jiun Yen
Help create beautiful flux network figures with Cytoscape
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Updated 22 Jul 2017
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Create Cytoscape network with thickness of arrows representing fluxes or rates of reactions.
Example: The glycolysis/gluconeogenesis pathway in AraGEM (a genome-scale model of Arabidopsis thaliana) 3 files are generated:
1. network.sif network for Cytoscape
2. edge.txt table to import (match interaction to network)
3. node.txt table to import (match name to network) Use cytoscape_style_GEM00.xml
These files are ready to import into Cytoscape to create your network. Use the visualization style I created to make it look awesome!

Cite As

Jiun Yen (2025). qks1lver/gem2cytoscape (https://github.com/qks1lver/gem2cytoscape), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2016a
Compatible with any release
Platform Compatibility
Windows macOS Linux
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AraGEM_glycolysis

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Version Published Release Notes
1.0.0.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.