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Respiratory Rate Estimation

version 3.0.0.0 (673 KB) by Peter H Charlton
Algorithms for estimation of respiratory rate from the electrocardiogram and photoplethysmogram

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Updated 14 May 2021

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Algorithms for estimation of respiratory rate from physiological signals

Cite As

Peter H Charlton (2021). Respiratory Rate Estimation (https://github.com/peterhcharlton/RRest), GitHub. Retrieved .

Comments and Ratings (17)

Peter H Charlton

In response to Gloria Cosoli's question - Thanks for your interest in the algorithms. Yes, see the Wiki for more details of extracting HRV signals (also known as 'Frequency Modulation' signals - https://github.com/peterhcharlton/RRest/wiki/Respiratory-Signal-Extraction#feature-measurement ), and this article: "Extraction of respiratory signals from the electrocardiogram and photoplethysmogram: technical and physiological determinants" ( https://doi.org/10.1088/1361-6579/aa670e ).

Gloria Cosoli

Is it possible to use these algorithms for the estimation of respiration rate from interbeat intervals series (HRV signals)?

Peter Gamma

The Polar Sensor Logger logs R-R interval data from the Polar H10 chest strap, and P-P-interval data from the Polar OH1 optical heart rate sensor. There are publications (Milind Y Desai et. al. Saeid Nahavandi, et. al.) which demonstrate, that the accuracy of these sensors are close to ECG devices. Polar H10 chest strap is not so comfortable to wear 24*7, in contrast to the Polar OH1. But can the P-P-interval data from the Polar OH1 be used for respiratory rate estimation, and are the P-P-interval data accurate enough for this purpose?

Peter Gamma

There is new option to get ECG peaks for Respiratory Rate Estimation from a Polar OH1 optical heart rate sensor, which has ECG accuracy, and is very comfortable to wear. There is one project available which used the Polar SDK, but unfortunately, it only runs on Android:

https://towardsdatascience.com/creating-a-data-stream-with-polar-device-a5c93c9ccc59

But the Polar OH1 can also be used with the Adafruit Pyloton Open Sourch Bike Computer:

https://github.com/PeterGamma/Pyloton-CircuitPython-Cycling-Computer

The Adafruit support suggested to modify the library of the Pyloton to intercept the data stream:

https://forums.adafruit.com/viewtopic.php?f=65&t=166045&start=15

This project needs some coding, but the Polar OH1 is much more handy than an ECG device.

André Sprengers

Peter Gamma

I suppose also the Polar OH1 Bluetooth Low Energy optical heart rate sensor should work for Respiratory Rate Estimation:
https://www.mathworks.com/matlabcentral/answers/518074-is-there-an-example-how-to-connect-the-polar-oh1-bluetooth-low-energy-heart-rate-sensor-with-matlab?s_tid=prof_contriblnk

Peter Gamma

Scott Harden DIY ECG with AD8232 and Sound Card could eventually serve as a low-cost device for Respiratory Rate Estimation:
https://www.youtube.com/watch?v=sP_-f5nsOEo&t=13s

Ruqiang

Peter Gamma

Respiratory rate is difficult to measure therefore respiratory rate estimation is wonderful.

Peter H Charlton

I will provide an introduction to estimating respiratory rate from the ECG and PPG, including an overview of how to use this toolbox, in a webinar on 16th January.
For further details see: http://peterhcharlton.github.io/RRest/webinar.html

Peter H Charlton

Version 3 has now been uploaded. It accompanies the following publication:

Charlton P.H. et al. Extraction of respiratory signals from the electrocardiogram and photoplethysmogram: technical and physiological determinants, Physiological Measurement, 38(5), pp. 669 - 690, 2017. DOI: 10.1088/1361-6579/aa670e

Further details are available at: http://peterhcharlton.github.io/RRest/factors_assessment.html

Peter H Charlton

We are currently preparing a manuscript which will accompany version 3 of the algorithms. Version 3 will be uploaded once this has been published.

Hello. When will it be updated the V3 algorithm?

yao hong bing

Rami Khushaba

Thanks for the update

Peter H Charlton

My apologies, this has been created in preparation for an upcoming paper publication. I intend to upload the files within the next few weeks.

Rami Khushaba

empty submission? please double check.
The download size is 2KB only. If you are waiting for your paper publication then please say something.

MATLAB Release Compatibility
Created with R2015a
Compatible with any release
Platform Compatibility
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RRest_v1.0/Algorithms

RRest_v1.0/Algorithms/calc_stats

RRest_v1.0/Algorithms/calculate_sqi

RRest_v1.0/Algorithms/estimate_ref_rr

RRest_v1.0/Algorithms/estimate_rr

RRest_v1.0/Algorithms/extract_resp_sig

RRest_v1.0/Algorithms/extract_resp_sig/feat_based_extraction

RRest_v1.0/Algorithms/extract_resp_sig/feat_based_extraction/COr_peak_detector

RRest_v1.0/Algorithms/extract_resp_sig/feat_based_extraction/GC_qrs_detector

RRest_v1.0/Algorithms/extract_resp_sig/feat_based_extraction/IMS_peak_detector

RRest_v1.0/Algorithms/extract_resp_sig/filtering

RRest_v1.0/Algorithms/fuse_rr

RRest_v1.0/Algorithms/universal_scripts

RRest_v1.0/Data_Import_Scripts

RRest_v2.0/Algorithms

RRest_v2.0/Algorithms/calc_stats

RRest_v2.0/Algorithms/calculate_sqi

RRest_v2.0/Algorithms/estimate_ref_rr

RRest_v2.0/Algorithms/estimate_rr

RRest_v2.0/Algorithms/extract_resp_sig

RRest_v2.0/Algorithms/extract_resp_sig/feat_based_extraction

RRest_v2.0/Algorithms/extract_resp_sig/feat_based_extraction/COr_peak_detector

RRest_v2.0/Algorithms/extract_resp_sig/feat_based_extraction/GC_qrs_detector

RRest_v2.0/Algorithms/extract_resp_sig/feat_based_extraction/IMS_peak_detector

RRest_v2.0/Algorithms/extract_resp_sig/filt

RRest_v2.0/Algorithms/extract_resp_sig/filtering

RRest_v2.0/Algorithms/fuse_rr

RRest_v2.0/Algorithms/universal_scripts

RRest_v2.0/Data_Import_Scripts

RRest_v2.0/Data_Import_Scripts/RRest_synth

RRest_v2.0/Publication_Specific_Scripts

RRest_v3.0/Algorithms

RRest_v3.0/Algorithms/calc_stats

RRest_v3.0/Algorithms/calculate_cc

RRest_v3.0/Algorithms/calculate_sqi

RRest_v3.0/Algorithms/estimate_ref_rr

RRest_v3.0/Algorithms/estimate_rr

RRest_v3.0/Algorithms/extract_resp_sig

RRest_v3.0/Algorithms/extract_resp_sig/feat_based_extraction

RRest_v3.0/Algorithms/extract_resp_sig/feat_based_extraction/COr_peak_detector

RRest_v3.0/Algorithms/extract_resp_sig/feat_based_extraction/GC_qrs_detector

RRest_v3.0/Algorithms/extract_resp_sig/feat_based_extraction/IMS_peak_detector

RRest_v3.0/Algorithms/extract_resp_sig/feat_based_extraction/LSSVMlabv1_8_R2009b_R2011a

RRest_v3.0/Algorithms/extract_resp_sig/filt

RRest_v3.0/Algorithms/extract_resp_sig/filtering

RRest_v3.0/Algorithms/fuse_rr

RRest_v3.0/Algorithms/universal_scripts

RRest_v3.0/Data_Import_Scripts

RRest_v3.0/Data_Import_Scripts/RRest_synth

RRest_v3.0/Publication_Specific_Scripts

RRest_v3.0/Publication_Specific_Scripts/ImP_SQI