NANSEN

Version 0.11.0 (25.8 MB) by Eivind Hennestad
A collection of apps and modules for processing, analysis and visualization of two-photon imaging data.
0.0
(0)
1 Download
Updated 28 Oct 2025
View License on GitHub

Cite As

Eivind Hennestad (2025). NANSEN (https://github.com/VervaekeLab/NANSEN/releases/tag/v0.11.0), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2023b
Compatible with R2020b to R2024b
Platform Compatibility
Windows macOS Linux
Tags Add Tags

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

+nansen

+nansen/+app

+nansen/+app/+setup

+nansen/+app/+tutorial

+nansen/+common

+nansen/+common/+abstract/@Specification

+nansen/+common/+assertion

+nansen/+common/+constant

+nansen/+common/+exception

+nansen/+common/+uiinform/+roimanager

+nansen/+config

+nansen/+config/+abstract

+nansen/+config/+addons

+nansen/+config/+addons/@AddonManager

+nansen/+config/+addons/@AddonManagerApp

+nansen/+config/+addons/@AddonManagerUI

+nansen/+config/+dloc

+nansen/+config/+dloc/+enum

+nansen/+config/+dloc/@DataLocationModel

+nansen/+config/+dloc/@DataLocationModelApp

+nansen/+config/+dloc/@DataLocationModelUI

+nansen/+config/+dloc/@FolderOrganizationUI

+nansen/+config/+dloc/@FolderPathViewer

+nansen/+config/+dloc/@LocalRootPathManager

+nansen/+config/+dloc/@MetadataInitializationUI

+nansen/+config/+mixin

+nansen/+config/+module

+nansen/+config/+module/@ModuleManager

+nansen/+config/+module/@ModuleManagerApp

+nansen/+config/+module/@ModuleManagerUI

+nansen/+config/+project

+nansen/+config/+project/+event

+nansen/+config/+project/@Preferences

+nansen/+config/+project/@Project

+nansen/+config/+project/@ProjectManager

+nansen/+config/+project/@ProjectManagerApp

+nansen/+config/+project/@ProjectManagerUI

+nansen/+config/+varmodel

+nansen/+config/+varmodel/+event

+nansen/+config/+varmodel/+template/+twophoton

+nansen/+dataio

+nansen/+dataio/+dataconvert/+roi

+nansen/+dataio/+dataconverter/+roi

+nansen/+dataio/+dataconverter/+roi/+adapter/@Caiman

+nansen/+dataio/+dataconverter/+roi/+adapter/@Extract

+nansen/+dataio/+dataconverter/+roi/+adapter/@Nansen

+nansen/+dataio/+dataconverter/+roi/+adapter/@Suite2p

+nansen/+dataio/+dataset

+nansen/+dataio/+dialog

+nansen/+dataio/+fileadapter

+nansen/+dataio/+fileadapter/+imagestack

+nansen/+dataio/+fileadapter/+internal

+nansen/+dataio/+fileadapter/+roi

+nansen/+dataio/+fileadapter/+timeseries

+nansen/+dataio/+metadata

+nansen/+dataio/+session

+nansen/+dataio/+session/deprecated

+nansen/+dataio/@DataIoModel

+nansen/+dataio/@DataSet

+nansen/+datatype/+roi

+nansen/+enum

+nansen/+interactive

+nansen/+internal

+nansen/+internal/+dataio/+fileadapter

+nansen/+internal/+plugin

+nansen/+internal/+plugin/+enum

+nansen/+internal/+project/+create

+nansen/+internal/+refactor

+nansen/+internal/+setup

+nansen/+internal/+setup/+java

+nansen/+internal/+system

+nansen/+internal/+templating

+nansen/+internal/+user

+nansen/+internal/+user/@NansenUserSession

+nansen/+internal/+utility

+nansen/+manage

+nansen/+manage/+options

+nansen/+metadata

+nansen/+metadata/+abstract

+nansen/+metadata/+abstract/@MetadataEntity

+nansen/+metadata/+abstract/@TableVariable

+nansen/+metadata/+event

+nansen/+metadata/+mixin

+nansen/+metadata/+tablevar

+nansen/+metadata/+tablevar/+mixin

+nansen/+metadata/+temp

+nansen/+metadata/+type

+nansen/+metadata/+type/+animal

+nansen/+metadata/+utility

+nansen/+metadata/@MetaTable

+nansen/+metadata/@MetaTableCatalog

+nansen/+mixin

+nansen/+module

+nansen/+module/resources/module_folder_template/+nansen/+module/+category/+name

+nansen/+notes

+nansen/+pipeline

+nansen/+pipeline/@PipelineAssignmentModelApp

+nansen/+pipeline/@PipelineAssignmentModelUI

+nansen/+plugin

+nansen/+plugin/+fileadapter

+nansen/+plugin/+fileadapter/+internal

+nansen/+processing

+nansen/+processing/+image

+nansen/+processing/+mixin

+nansen/+processing/+roi

+nansen/+processing/+roi/+fissa

+nansen/+processing/+util

+nansen/+processing/@MotionCorrection

+nansen/+processing/@MotionCorrectionPreview

+nansen/+processing/@RoiSegmentation

+nansen/+processing/@SignalExtractor

+nansen/+session

+nansen/+session/+methods

+nansen/+session/+methods/+template

+nansen/+tools/+image/+registration

+nansen/+tools/+image/+resize

+nansen/+tools/+image/+transform

+nansen/+twophoton/+autosegmentation

+nansen/+twophoton/+autosegmentation/+able

+nansen/+twophoton/+autosegmentation/+cnmf

+nansen/+twophoton/+autosegmentation/+extract

+nansen/+twophoton/+autosegmentation/+extract/@Options

+nansen/+twophoton/+autosegmentation/+suite2p

+nansen/+twophoton/+autosegmentation/+suite2p/@Options

+nansen/+twophoton/+autosegmentation/+template

+nansen/+twophoton/+roi

+nansen/+twophoton/+roi/+compute

+nansen/+twophoton/+roi/+stats

+nansen/+twophoton/+roimasks

+nansen/+twophoton/+roisignals

+nansen/+twophoton/+roisignals/+analyze

+nansen/+twophoton/+roisignals/+extract

+nansen/+twophoton/+roisignals/+process/+deconvolve

+nansen/+twophoton/+roisignals/+process/+dff

+nansen/+ui

+nansen/+ui/+control

+nansen/+ui/+data

+nansen/+ui/+dialog

+nansen/+ui/+fileviewer

+nansen/+ui/+mixin

+nansen/+ui/+widget

+nansen/+util

+nansen/+util/+path

+nansen/+util/+text

algorithms

algorithms/+flufinder

algorithms/+flufinder/+binarize

algorithms/+flufinder/+convert

algorithms/+flufinder/+detect

algorithms/+flufinder/+filter

algorithms/+flufinder/+longitudinal

algorithms/+flufinder/+module

algorithms/+flufinder/+preprocess

algorithms/+flufinder/+signals

algorithms/+flufinder/+utility

algorithms/+ophys/+twophoton

algorithms/+ophys/+twophoton/+analysis

algorithms/+ophys/+twophoton/+data

algorithms/+ophys/+twophoton/+plotting

algorithms/+stack

algorithms/+stack/+downsample

algorithms/+stack/+process/+compute

algorithms/+stack/+process/+filter2

algorithms/+stack/+process/+filter3

algorithms/+stack/+process/+framebin

algorithms/+stack/+reshape

algorithms/+stack/+transform

algorithms/+stack/+zproject

api/+nansen

apps

apps/+fovmanager

apps/+fovmanager/+fileio

apps/+fovmanager/+mapobject

apps/+fovmanager/+utility

apps/+fovmanager/+utility/+atlas

apps/+fovmanager/+view

apps/+fovmanager/+widget

apps/+fovmanager/@App

apps/+imviewer/+export

apps/+imviewer/+plot

apps/+imviewer/+plugin/@FlowRegistration

apps/+imviewer/+plugin/@NoRMCorre

apps/+imviewer/+plugin/@RoiClassifier

apps/+imviewer/+plugin/@RoiManager

apps/+imviewer/+plugin/@RoiSignalVideo

apps/+imviewer/+tool

apps/+imviewer/+utility

apps/+imviewer/+widget

apps/+imviewer/@App

apps/+imviewer/@ImviewerPlugin

apps/+mclassifier

apps/+nansen

apps/+nansen/+enum

apps/+nansen/@App

apps/+nansen/@FileViewer

apps/+nansen/@MessageDisplay

apps/+nansen/@MetaTableViewer

apps/+nansen/@Preferences

apps/+nansen/@TaskProcessor

apps/+nansen/internal

apps/+roiclassifier

apps/+roiclassifier/@App

apps/+roisignalviewer/@App

apps/+signalviewer

apps/+signalviewer/+event

apps/+signalviewer/+plot

apps/+signalviewer/+pointerTool

apps/+signalviewer/+utility

apps/+signalviewer/@App

apps/+structeditor

apps/+structeditor/+eventdata

dashboards

dashboards/+roimanager

datatypes

datatypes/+nansen/+roisignals

datatypes/+nansen/+stack

datatypes/+nansen/+stack/+data

datatypes/+nansen/+stack/+data/+abstract

datatypes/+nansen/+stack/+metadata

datatypes/+nansen/+stack/+processor

datatypes/+nansen/+stack/+utility

datatypes/+nansen/+stack/+virtual

datatypes/+nansen/+stack/@Deinterleaver

datatypes/+nansen/+stack/@HighResolutionImage

datatypes/+nansen/+stack/@ImageStack

examples

external

external/fileexchange

external/fileexchange/+nansen/+external/+fex/+datautil

external/fileexchange/+nansen/+external/+fex/+sysutil

external/fileexchange/colormaps

external/fileexchange/colormaps/cbrewer/cbrewer

external/fileexchange/colormaps/matplotlib/colormaps

external/fileexchange/other

external/fileexchange/other/GetGoogleSpreadsheet

general

general/+tools

general/+utility

general/+utility/+cell

general/+utility/+class

general/+utility/+data

general/+utility/+data/+mixin

general/+utility/+dir

general/+utility/+io

general/+utility/+path

general/+utility/+string

general/+utility/+struct

general/+utility/+system

graphics

graphics/+applify

graphics/+applify/+menu

graphics/+applify/+mixin

graphics/+applify/+utility

graphics/+applify/+utility/+abstract

graphics/+applify/@uicontrolSchemer

graphics/+nansen/+theme

graphics/+uics

graphics/+uim

graphics/+uim/+abstract

graphics/+uim/+control

graphics/+uim/+decorator

graphics/+uim/+dialog

graphics/+uim/+event

graphics/+uim/+graphics

graphics/+uim/+illustration

graphics/+uim/+interface

graphics/+uim/+interface/+pointerTool

graphics/+uim/+interface/+pointerTool/+mixin

graphics/+uim/+mixin

graphics/+uim/+shape

graphics/+uim/+style

graphics/+uim/+utility

graphics/+uim/+utility/+layout

graphics/+uim/+widget

graphics/+uiw/+abstract

graphics/+uiw/+utility

graphics/+uiw/+widget

modules

modules/+nansen/+module/+general/+core/+fileadapter

modules/+nansen/+module/+general/+core/+fileadapter/+ExcelFile

modules/+nansen/+module/+general/+core/+fileadapter/+MatFile

modules/+nansen/+module/+general/+core/+sessionmethod/+data

modules/+nansen/+module/+general/+core/+sessionmethod/+data/+organize

modules/+nansen/+module/+general/+core/+tablevariable/+session

modules/+nansen/+module/+general/+core/+tablevariable/+session/deprecated

modules/+nansen/+module/+general/+core/+tablevariable/+subject

modules/+nansen/+module/+ophys/+macroscope

modules/+nansen/+module/+ophys/+macroscope/+fileadapter

modules/+nansen/+module/+ophys/+twophoton/+fileadapter

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+data/+open

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+data/+view

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+plot

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+autoSegmentation

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+deconvolution

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+imageProcessing

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+motionCorrection

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+roiCuration

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+roiRegistration

modules/+nansen/+module/+ophys/+twophoton/+sessionmethod/+process/+signalExtraction

modules/+nansen/+module/+ophys/+twophoton/+utility

modules/+nansen/+module/+ophys/+twophoton/+utility/+mscan

modules/+nansen/+module/+ophys/+twophoton/+utility/+prairieview

modules/+nansen/+module/+ophys/+twophoton/+utility/+scanimage

modules/+nansen/+module/+ophys/+twophoton/+utility/+sciscan

modules/+nansen/+module/+ophys/+twophoton/+utility/+thorlabs

shortcuts

shortcuts/+nansen

tools

tools/+roimanager

tools/+roimanager/+autosegment

tools/+roimanager/+binarize

tools/+roimanager/+enum

tools/+roimanager/+eventdata

tools/+roimanager/+fileio

tools/+roimanager/+imtools

tools/+roimanager/+pointerTool

tools/+roimanager/+roitools

tools/+roimanager/+utilities

tools/+roimanager/resources/icons

tools/+timetable

wrappers

wrappers/+nansen/+plugin/+imviewer

wrappers/+nansen/+plugin/+signalviewer

wrappers/+nansen/+toolbox

wrappers/+nansen/+wrapper/+abstract

wrappers/+nansen/+wrapper/+extract

wrappers/+nansen/+wrapper/+extract/+util

wrappers/+nansen/+wrapper/+extract/@Options

wrappers/+nansen/+wrapper/+extract/@Processor

wrappers/+nansen/+wrapper/+extract/@ProcessorT

wrappers/+nansen/+wrapper/+flowreg

wrappers/+nansen/+wrapper/+flowreg/+presets

wrappers/+nansen/+wrapper/+flowreg/+utility

wrappers/+nansen/+wrapper/+flowreg/@Options

wrappers/+nansen/+wrapper/+flowreg/@Processor

wrappers/+nansen/+wrapper/+normcorre/+presets

wrappers/+nansen/+wrapper/+normcorre/+utility

wrappers/+nansen/+wrapper/+normcorre/@Options

wrappers/+nansen/+wrapper/+normcorre/@Processor

wrappers/+nansen/+wrapper/+quicky/+presets

wrappers/+nansen/+wrapper/+quicky/+utility

wrappers/+nansen/+wrapper/+quicky/@Options

wrappers/+nansen/+wrapper/+quicky/@Processor

wrappers/+nansen/+wrapper/+suite2p

wrappers/+nansen/+wrapper/+suite2p/+utility

wrappers/+nansen/+wrapper/+suite2p/@Options

wrappers/+nansen/+wrapper/+suite2p/@Processor

Version Published Release Notes
0.11.0

To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.