spm_2_bids

Version 0.3.0 (49.4 KB) by Remi Gau
convert SPM output to BIDS derivatives
0.0
(0)
2 Downloads
Updated 1 Aug 2023
View License on GitHub

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spm_2_bids

Small code base to help convert the MRI spm output to a valid bids derivatives.

This code only generates the plausible BIDS derivatives filename for given file that has been preprocessed with SPM.

Most of the renaming is based on the SPM prefixes combinations.

It is configurable to adapt to new set of prefixes.

Dependencies

Can be installed with :

For MATLAB

make install_dev

For Octave

make install_dev_octave

Usage

file = 'wmsub-01_desc-skullstripped_T1w.nii';

[new_filename, pth, json] = spm_2_bids(file);

new_filename =

 'sub-01_space-IXI549Space_desc-preproc_T1w.nii');

For more see the documentation.

Cite As

Remi Gau (2024). spm_2_bids (https://github.com/cpp-lln-lab/spm_2_bids/releases/tag/v0.3.0), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2023a
Compatible with any release
Platform Compatibility
Windows macOS Linux
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src

src/defaults

src/utils

tests

tests/utils

Version Published Release Notes
0.3.0

0.2.0.0

See release notes for this release on GitHub: https://github.com/cpp-lln-lab/spm_2_bids/releases/tag/v0.2.0
0.1.0.0

See release notes for this release on GitHub: https://github.com/cpp-lln-lab/spm_2_bids/releases/tag/v0.1.0
To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.