Select rows in a given table according to 3 criteria
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I have a table data like this
%% Data of Table
Name = {'A';'A';'A';'B';'B';'C';'D'};
index = [1;9;14;16;19;38;55];
Var_1 = [1;0;0;0;0;1;1];
Var_2 = [0;1;0;1;0;0;1];
Var_3 = [0;0;1;0;0;0;0];
Var_4 = [0;0;1;1;1;0;0];
Var_5 = [1;1;0;1;0;0;0];
Var_6 = [1;1;1;0;0;1;1];
T = table(Name,index,Var_1,Var_2,Var_3,Var_4,Var_5,Var_6);
V = {[1,2],[2,6],[1,3,4],[4,8,9],[1,9,32,40],[1,2,3,45,53]};
F = @(n)sprintf("{%s}",join(string(n),","));
T.Properties.VariableNames(3:8) = cellfun(F,V);
I have two groups in the above table
group_1 = [3;4;5];
group_2 = [6;7;8];
T_group_1= T(:,group_1);
T_group_2= T(:,group_2);
I want to choose three rows of the table according to this criteria
1) The rows should be belong to 'A' and 'B'.
2) Sum of the any column of chosen row should be smaller or equal 2 for T_group_1
3) Sum of the any column of chosen row should be greater than 3 for T_group_2
I have came up with the following code
%% first criteria
T_new = T((strcmp(T.Name, 'A') | strcmp(T.Name, 'B')),:);
group_1_new = [3;4;5]-2;
group_2_new = [6;7;8]-2;
%% choose row index
chosen_index_candidate = cell([],1);
i = 1;
m = 0;
while 1
chosen_index = randperm(size(T_new{:,3:end},1),3);
sum_of_each_col = sum(T_new{chosen_index,3:end},1);
m = m+1;
if m==40 % I want to find some number to break the loop
break
end
if any(sum_of_each_col(:,group_1_new)<=2) && any(sum_of_each_col(:,group_2_new)>=3) %% second and third criteria
if i==1
chosen_index_candidate{i} = chosen_index;
i = i+1;
else
if any(cell2mat(cellfun(@(x)all(ismember(sort(x),sort(chosen_index))),chosen_index_candidate,'uni',0)))==0
chosen_index_candidate{i} = chosen_index;
i = i+1;
end
end
end
end
I think the code is not written in proper way especially break from while loop
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Accepted Answer
J. Alex Lee
on 5 Jun 2021
This is small enough you could generate the full list of combinations
% generate all combinations
alltriplets = nchoosek(1:7,3)
% randomize
iterlist = randperm(size(alltriplets,1))
% replace your while loop with a for loop over all possible triplets
for i = iterlist
end
3 Comments
J. Alex Lee
on 5 Jun 2021
I guess that should work, but I personally don't like the counter approach. You can create a true/false mask that can be applied to your randomly permuted list of triplets
alltriplets = nchoosek(1:size(T_new,1),3); % generate all combinations
iterlist = randperm(size(alltriplets,1)); % randomize
meetsCriteria = false(size(alltriplets,1),1);
for i = iterlist
chosen_index = alltriplets(i,:);
sum_of_each_col = sum(T_new{chosen_index,3:end},1);
if any(sum_of_each_col(:,group_1_new)<=2) && any(sum_of_each_col(:,group_2_new)>=3)
meetsCriteria(i) = true;
end
end
% then you can extract the rows of alltriplets that satisfies your
% condition as an array, rather than a cell
chosen_index_candidate = alltriplets(meetsCriteria,:)
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