optimizing GPR model using genetic algorithm
4 views (last 30 days)
Show older comments
As I tried to optimize the hyperparameters and sigma using GA, it is showing some error. Also, is it possible to limit the maximum
objective evaluations or put lb/ub on GA optimization? Please help.
clear;clc;close all
load('data001.mat')
x=data001(:,1);
y=data001(:,2);
kernel = optimizableVariable('KernelFunction',{'exponential','squaredexponential','matern32','matern52',...
'rationalquadratic','ardexponential','ardsquaredexponential','ardmatern32','ardmatern52','ardrationalquadratic'},...
'Type','categorical');
sigma = optimizableVariable('Sigma',[1e-4,10],'Transform','log');
go = ga(@objFcn,2) % calling objective function in optimization algorithm
kernel= go.XAtMinObjective.KernelFunction
model = fitrgp(x,y, 'KernelFunction', char(kernel));
yfit = predict(model, x);
function Loss = objFcn(Vars, x, y)
m = fitrgp(x, y, 'KernelFunction', char(Vars.KernelFunction), ...
'Sigma', Vars.Sigma, 'ConstantSigma', true,...
'KFold', 5);
Loss = kfoldLoss(m);
end
1 Comment
Alan Weiss
on 11 Jul 2022
Edited: Alan Weiss
on 11 Jul 2022
You asked this question elsewhere. See my answer here: https://www.mathworks.com/matlabcentral/answers/1754650-changing-optimization-technique-for-gaussian-process-regression-model?s_tid=srchtitle
Alan Weiss
MATLAB mathematical toolbox documentation
Answers (0)
See Also
Categories
Find more on Gaussian Process Regression in Help Center and File Exchange
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!